Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JD108_RS10295 Genome accession   NZ_CP066308
Coordinates   1985884..1986942 (+) Length   352 a.a.
NCBI ID   WP_198829720.1    Uniprot ID   -
Organism   Brevibacillus composti strain FJAT-54423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1980884..1991942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD108_RS10280 (JD108_10280) pgsA 1982166..1982741 (+) 576 WP_198829717.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JD108_RS10285 (JD108_10285) cinA 1982796..1984046 (+) 1251 WP_198829718.1 competence/damage-inducible protein A Machinery gene
  JD108_RS10290 (JD108_10290) - 1984043..1985629 (+) 1587 WP_198829719.1 DEAD/DEAH box helicase -
  JD108_RS10295 (JD108_10295) recA 1985884..1986942 (+) 1059 WP_198829720.1 recombinase RecA Machinery gene
  JD108_RS10300 (JD108_10300) - 1987007..1987648 (+) 642 WP_198829721.1 RecX family transcriptional regulator -
  JD108_RS10305 (JD108_10305) rny 1987934..1989481 (+) 1548 WP_228728371.1 ribonuclease Y -
  JD108_RS10310 (JD108_10310) - 1989640..1990434 (+) 795 WP_198829723.1 TIGR00282 family metallophosphoesterase -
  JD108_RS10315 (JD108_10315) spoVS 1990551..1990811 (+) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  JD108_RS10320 (JD108_10320) - 1990921..1991859 (+) 939 WP_198829724.1 dipeptidase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37746.08 Da        Isoelectric Point: 4.8269

>NTDB_id=519216 JD108_RS10295 WP_198829720.1 1985884..1986942(+) (recA) [Brevibacillus composti strain FJAT-54423]
MSDRRAALESALRQIEKQFGKGSIMKLGEMANVQVSTVSTGALAIDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYASKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDVIGSKT
KVKVVKNKVAPPFKTAEVDIMYGEGISKEGSILDIGAEIDVVQKSGAWYSFNDERLGQGRENAKIFLKENPAIAAQIEAK
VREYYSLNPGSIPATEPVEDPEQDEEPMFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=519216 JD108_RS10295 WP_198829720.1 1985884..1986942(+) (recA) [Brevibacillus composti strain FJAT-54423]
TTGTCAGATCGTCGCGCCGCTTTGGAAAGTGCATTGCGTCAAATAGAAAAACAGTTTGGCAAGGGTTCCATCATGAAGCT
GGGGGAGATGGCGAACGTCCAGGTTTCTACCGTATCCACCGGTGCTCTCGCTATAGATATCGCCCTTGGAGTGGGAGGAT
TCCCACGCGGTCGAATCGTAGAAATTTACGGACCGGAGTCTTCCGGTAAGACGACGGTTGCTCTCCACGCGATTGCAGAG
GTGCAGCGTCAGGGCGGACAGGCCGCATTCATCGACGCGGAGCATGCGCTCGACCCCGTCTACGCATCCAAGCTGGGCGT
AAACATCGAGGAACTGCTTCTGTCCCAGCCGGATACCGGCGAACAAGCGTTGGAAATCGCGGAGGCGCTGGTTCGTTCCG
GCGCAGTCGACATTATCGTCGTGGACTCTGTAGCGGCACTCGTGCCAAAAGCCGAGATCGAAGGCGAGATGGGCGACTCC
CACGTGGGGCTGCAGGCCCGTCTGATGTCCCAAGCGCTGCGCAAGCTCTCCGGCGCGATCAATAAATCGAAGACCATCGC
GATCTTCATTAACCAGCTGCGCGAAAAGGTAGGCGTCATGTTCGGTAACCCGGAGACCACACCGGGCGGACGAGCGCTGA
AGTTCTACGCCAGCGTGCGTCTCGATGTGCGCAAGGCTGAATCGATTAAAGTGGGCAATGATGTGATCGGCAGCAAGACC
AAGGTAAAAGTCGTCAAAAACAAAGTGGCGCCTCCGTTCAAGACTGCAGAGGTAGACATCATGTACGGCGAAGGGATTTC
CAAAGAGGGCAGCATTCTGGATATCGGCGCAGAGATTGATGTGGTGCAAAAGAGCGGTGCGTGGTATTCTTTCAATGACG
AGCGTCTGGGTCAGGGACGTGAAAATGCGAAGATCTTCCTGAAGGAAAACCCGGCTATCGCAGCACAAATCGAAGCGAAA
GTACGTGAATACTACAGTCTCAATCCGGGCTCGATTCCAGCTACCGAGCCGGTCGAAGATCCGGAGCAAGACGAAGAGCC
GATGTTTGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.622

93.182

0.77
  recA Latilactobacillus sakei subsp. sakei 23K

70.623

95.739

0.676
  recA Streptococcus mitis SK321

65.363

100

0.665
  recA Streptococcus pneumoniae Rx1

66.477

100

0.665
  recA Streptococcus pneumoniae D39

66.477

100

0.665
  recA Streptococcus pneumoniae R6

66.477

100

0.665
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.665
  recA Streptococcus mitis NCTC 12261

65.722

100

0.659
  recA Lactococcus lactis subsp. cremoris KW2

68.788

93.75

0.645
  recA Streptococcus mutans UA159

68.389

93.466

0.639
  recA Streptococcus pyogenes NZ131

69.136

92.045

0.636
  recA Neisseria gonorrhoeae MS11

63.584

98.295

0.625
  recA Neisseria gonorrhoeae MS11

63.584

98.295

0.625
  recA Neisseria gonorrhoeae strain FA1090

63.584

98.295

0.625
  recA Ralstonia pseudosolanacearum GMI1000

67.278

92.898

0.625
  recA Glaesserella parasuis strain SC1401

62.5

97.727

0.611
  recA Vibrio cholerae strain A1552

65.749

92.898

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.749

92.898

0.611
  recA Acinetobacter baumannii D1279779

60.857

99.432

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.898

0.591
  recA Pseudomonas stutzeri DSM 10701

61.243

96.023

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.704

96.875

0.588
  recA Acinetobacter baylyi ADP1

63.889

92.045

0.588
  recA Helicobacter pylori 26695

60.234

97.159

0.585
  recA Helicobacter pylori strain NCTC11637

59.942

97.159

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.909

0.565