Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SCIM_RS08870 Genome accession   NC_018073
Coordinates   1807993..1809138 (-) Length   381 a.a.
NCBI ID   WP_003077215.1    Uniprot ID   A0A1L7MXQ4
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802993..1814138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS08835 (SCIM_1590) - 1803465..1804706 (-) 1242 WP_003077185.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SCIM_RS08840 (SCIM_1591) - 1804905..1805210 (-) 306 WP_003075274.1 DUF1292 domain-containing protein -
  SCIM_RS08845 (SCIM_1592) ruvX 1805228..1805647 (-) 420 WP_003075276.1 Holliday junction resolvase RuvX -
  SCIM_RS08850 (SCIM_1593) - 1805647..1805913 (-) 267 WP_009569646.1 IreB family regulatory phosphoprotein -
  SCIM_RS08855 (SCIM_1594) - 1806219..1806776 (-) 558 WP_003077293.1 SP0191 family lipoprotein -
  SCIM_RS10195 - 1807293..1807427 (-) 135 WP_003077174.1 hypothetical protein -
  SCIM_RS08865 (SCIM_1595) spx 1807509..1807907 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SCIM_RS08870 (SCIM_1596) recA 1807993..1809138 (-) 1146 WP_003077215.1 recombinase RecA Machinery gene
  SCIM_RS08875 (SCIM_1597) cinA 1809187..1810455 (-) 1269 WP_003077272.1 competence/damage-inducible protein A Machinery gene

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41243.89 Da        Isoelectric Point: 4.9888

>NTDB_id=51904 SCIM_RS08870 WP_003077215.1 1807993..1809138(-) (recA) [Streptococcus intermedius JTH08]
MAKKQKKIDEISKKFGEERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSE
NAKKYLADHPEIFDEIDRKVRIHYGLIEDDAEDEKKVETSNSANKAEEVTLDLDGAIEIEE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=51904 SCIM_RS08870 WP_003077215.1 1807993..1809138(-) (recA) [Streptococcus intermedius JTH08]
ATGGCGAAAAAACAAAAAAAAATAGATGAAATTTCAAAGAAATTTGGTGAGGAACGCCAAAAAGCATTAGATAATGCACT
TAAAAATATTGAAAAGGATTTTGGTAAGGGAGCAATTATGCGCCTGGGGGAACGAGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCATTAGATATTGCACTTGGTGCAGGAGGGTATCCAAAGGGACGGATTATTGAAATTTATGGTCCA
GAGTCTTCTGGTAAGACAACGGTGGCTCTTCATGCGGTAGCGCAGGCCCAAAAAGAGGGAGGGATTGCAGCTTTTATTGA
CGCTGAACATGCTCTTGATCCAGCCTATGCGCAGGCACTTGGGGTTAATATTGATGAATTATTACTTTCTCAACCGGATT
CAGGTGAACAGGGACTTGAAATTGCTGGAAAATTGATTGATTCGGGGGCCGTAGATTTGGTGGTTATCGACTCAGTTGCA
GCTCTTGTACCGCGTGCTGAAATTGATGGAGATATAGGAGATAGCCATGTTGGTTTACAAGCACGGATGATGAGCCAAGC
GATGCGGAAGTTATCTGCATCTATCAATAAAACGAAGACGATTGCAATTTTTATTAATCAATTACGAGAAAAAGTTGGTA
TCATGTTTGGAAATCCAGAAACAACGCCGGGAGGTCGTGCCCTTAAGTTTTATGCTTCAGTTCGCTTGGATGTCCGCGGA
AACACTCAAATCAAAGGTACAGGTGATGAAAAAGACACCAATGTGGGGAAAGAAACGAAGATCAAGGTCGTGAAGAATAA
AGTTGCTCCGCCGTTTAAGGAAGCCTTCGTAGAAATCATGTATGGTGAGGGCATTTCTAAAACAGGCGAGCTCATCAAGA
TTGCTACGGATCTAGACATTATTAAAAAAGCAGGTGCGTGGTATTCTTACAATGATGAAAAGATTGGACAAGGGTCTGAA
AATGCTAAGAAATACTTGGCAGATCATCCAGAAATTTTTGATGAAATTGATCGCAAGGTTAGAATTCATTATGGTTTGAT
TGAGGATGATGCTGAAGATGAGAAAAAGGTGGAAACAAGCAACTCAGCAAACAAAGCAGAGGAAGTCACATTAGACTTGG
ATGGTGCGATTGAAATCGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7MXQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

88.189

100

0.882
  recA Streptococcus mitis SK321

87.927

100

0.879
  recA Streptococcus pneumoniae Rx1

86.494

100

0.874
  recA Streptococcus pneumoniae TIGR4

86.494

100

0.874
  recA Streptococcus pneumoniae D39

86.494

100

0.874
  recA Streptococcus pneumoniae R6

86.494

100

0.874
  recA Streptococcus mutans UA159

85.714

100

0.866
  recA Streptococcus pyogenes NZ131

85.302

100

0.853
  recA Lactococcus lactis subsp. cremoris KW2

78.161

91.339

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

68.713

89.764

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

69.909

86.352

0.604
  recA Neisseria gonorrhoeae strain FA1090

60.819

89.764

0.546
  recA Neisseria gonorrhoeae MS11

60.819

89.764

0.546
  recA Neisseria gonorrhoeae MS11

60.819

89.764

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.272

85.039

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.769

85.302

0.535
  recA Vibrio cholerae strain A1552

62.769

85.302

0.535
  recA Glaesserella parasuis strain SC1401

59.706

89.239

0.533
  recA Acinetobacter baumannii D1279779

61.846

85.302

0.528
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

86.352

0.528
  recA Acinetobacter baylyi ADP1

60.615

85.302

0.517
  recA Ralstonia pseudosolanacearum GMI1000

60.883

83.202

0.507
  recA Helicobacter pylori 26695

58.896

85.564

0.504
  recA Helicobacter pylori strain NCTC11637

58.896

85.564

0.504
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.006

86.877

0.504
  recA Pseudomonas stutzeri DSM 10701

58.769

85.302

0.501

Multiple sequence alignment