Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JC827_RS04880 Genome accession   NZ_CP066137
Coordinates   1079251..1080321 (+) Length   356 a.a.
NCBI ID   WP_107679618.1    Uniprot ID   -
Organism   Morganella morganii strain FAM24672     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1074251..1085321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC827_RS04860 (JC827_04860) aroL 1074595..1075128 (+) 534 WP_046895207.1 shikimate kinase AroL -
  JC827_RS04865 (JC827_04865) aas 1075282..1077435 (+) 2154 WP_107679620.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  JC827_RS04870 (JC827_04870) lplT 1077432..1078628 (+) 1197 WP_046895209.1 lysophospholipid transporter LplT -
  JC827_RS04875 (JC827_04875) pncC 1078641..1079162 (+) 522 WP_107679619.1 nicotinamide-nucleotide amidase -
  JC827_RS04880 (JC827_04880) recA 1079251..1080321 (+) 1071 WP_107679618.1 recombinase RecA Machinery gene
  JC827_RS04885 (JC827_04885) alaS 1080693..1083320 (+) 2628 WP_107679617.1 alanine--tRNA ligase -
  JC827_RS04890 (JC827_04890) csrA 1083550..1083741 (+) 192 WP_004237871.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38338.71 Da        Isoelectric Point: 4.8277

>NTDB_id=517749 JC827_RS04880 WP_107679618.1 1079251..1080321(+) (recA) [Morganella morganii strain FAM24672]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLALDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRQGRVCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGDEVVG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINTMGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATIYLKEHPEMADEL
DKKLRELLLNHSGEFSTAAESFNEESETEDTGNEEF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=517749 JC827_RS04880 WP_107679618.1 1079251..1080321(+) (recA) [Morganella morganii strain FAM24672]
ATGGCTATTGATGAGAACAAACAGAAAGCACTGGCAGCAGCCTTAGGTCAGATCGAGAAGCAGTTCGGTAAAGGTTCAAT
CATGCGTCTGGGCGAAGACCGTTCCATGGACGTGGAAACCATCTCAACCGGCTCTCTGGCACTGGACGTTGCGCTGGGTG
CAGGTGGTCTGCCGCTGGGTCGTATTGTTGAAATCTACGGGCCTGAATCTTCCGGTAAAACCACGCTGACGTTACAGGTC
ATCGCAGCTGCACAGCGTCAGGGGCGTGTGTGTGCGTTTATCGATGCGGAACACGCACTGGACCCGGTCTACGCCAAGAA
ACTGGGTGTGGATATTGATAACCTGCTGTGCTCCCAGCCGGATACCGGTGAACAGGCACTGGAAATCTGTGATGCCTTAA
CCCGCTCCGGTGCGGTTGATGTCATAATTGTTGACTCCGTGGCTGCACTGACACCAAAAGCTGAAATCGAAGGTGAAATC
GGTGATTCTCACATGGGTCTGGCTGCACGTATGATGAGCCAGGCAATGCGTAAACTGGCCGGTAACCTGAAAAACTCCAA
CACCCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGGGGTA
ACGCACTGAAATTCTACGCGTCTGTTCGTCTGGATATCCGCCGTATCGGCGCAGTGAAAAACGGCGATGAAGTGGTCGGC
AGCGAAACCCGCGTGAAAGTAGTGAAAAACAAAGTAGCTGCACCGTTCAAACAGGCTGAGTTCCAGATCATGTACGGTGA
AGGTATCAACACCATGGGCGAACTGATTGACCTGGGTGTGAAACATAAACTGGTTGAGAAAGCCGGTGCATGGTACAGCT
ACAACGGTGAAAAAATTGGTCAGGGTAAGGCAAACGCCACTATCTACCTGAAAGAACATCCGGAAATGGCGGATGAACTG
GACAAAAAATTACGTGAGTTATTACTGAACCATTCCGGTGAATTCAGTACCGCAGCAGAAAGTTTCAATGAAGAAAGCGA
AACTGAAGATACAGGTAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.756

92.135

0.781
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.756

92.135

0.781
  recA Pseudomonas stutzeri DSM 10701

75.455

92.697

0.699
  recA Glaesserella parasuis strain SC1401

69.209

99.438

0.688
  recA Acinetobacter baylyi ADP1

69.565

96.91

0.674
  recA Acinetobacter baumannii D1279779

72.783

91.854

0.669
  recA Ralstonia pseudosolanacearum GMI1000

68.485

92.697

0.635
  recA Neisseria gonorrhoeae MS11

69.325

91.573

0.635
  recA Neisseria gonorrhoeae MS11

69.325

91.573

0.635
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.573

0.635
  recA Streptococcus pneumoniae Rx1

60.563

99.719

0.604
  recA Streptococcus pneumoniae R6

60.563

99.719

0.604
  recA Streptococcus pneumoniae D39

60.563

99.719

0.604
  recA Streptococcus pneumoniae TIGR4

60.563

99.719

0.604
  recA Streptococcus mitis NCTC 12261

60.623

99.157

0.601
  recA Streptococcus mitis SK321

60.623

99.157

0.601
  recA Helicobacter pylori strain NCTC11637

64.22

91.854

0.59
  recA Helicobacter pylori 26695

63.914

91.854

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.272

91.011

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.169

0.576
  recA Streptococcus pyogenes NZ131

62.462

91.292

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.292

0.567
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.73

0.565
  recA Streptococcus mutans UA159

61.538

91.292

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.258

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.169

0.539