Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   A458_RS29870 Genome accession   NC_018028
Coordinates   1754681..1755724 (+) Length   347 a.a.
NCBI ID   WP_014819877.1    Uniprot ID   I4CS11
Organism   Stutzerimonas stutzeri CCUG 29243     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1749681..1760724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A458_RS29855 (A458_08095) - 1749979..1751409 (-) 1431 WP_014819874.1 YfjI family protein -
  A458_RS29860 (A458_08100) - 1752890..1754002 (+) 1113 WP_014819875.1 acyltransferase family protein -
  A458_RS29865 (A458_08105) - 1754100..1754597 (+) 498 WP_014819876.1 CinA family protein -
  A458_RS29870 (A458_08110) recA 1754681..1755724 (+) 1044 WP_014819877.1 recombinase RecA Machinery gene
  A458_RS29875 (A458_08115) recX 1755730..1756197 (+) 468 WP_014819878.1 recombination regulator RecX -
  A458_RS29880 (A458_08120) - 1756309..1757400 (-) 1092 WP_014819879.1 LOG family protein -
  A458_RS29885 (A458_08125) - 1757516..1758925 (-) 1410 WP_014819880.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 37130.54 Da        Isoelectric Point: 5.3078

>NTDB_id=51760 A458_RS29870 WP_014819877.1 1754681..1755724(+) (recA) [Stutzerimonas stutzeri CCUG 29243]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKYLEDNPEIGQEIEQ
QIRDKLLVVAPNTKANPVTEDLADADL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=51760 A458_RS29870 WP_014819877.1 1754681..1755724(+) (recA) [Stutzerimonas stutzeri CCUG 29243]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCAGCCCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCGCAGTGATGCG
CATGGGCGATCATGATCGTCAGGCCATTCCGGCCATCTCTACCGGCTCGCTGGGCCTGGACATCGCGCTTGGCATCGGCG
GCCTGCCCAAGGGCCGTATCGTCGAAATCTACGGTCCGGAATCCTCCGGTAAGACCACCCTGACCCTGTCGGTGATCGCC
GAAGCGCAGAAGATGGGCGCCACCTGTGCCTTCGTCGACGCCGAACACGCGCTGGACCCGGACTATGCCGGCAAGTTGGG
CGTGAATGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCACTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ACGCACGTCGGCCTGCAGGCACGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATTAAGAACGCCAATTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATTCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCGCCGCCCTTCCGTCAGGCTGAGTTCCAGATCCTCTATGGCAAGGGCAT
CTACCGCAATGGCGAGGTCATTGATCTCGGCGTGCAGCAGGGCCTGGTGGAGAAGTCCGGCGCCTGGTATGCCTACAAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTATCTGGAAGACAATCCGGAGATCGGTCAGGAGATCGAGCAA
CAGATCCGCGACAAGTTGCTGGTAGTTGCGCCAAACACCAAGGCCAACCCGGTTACCGAAGATCTGGCTGACGCCGATCT
CTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB I4CS11

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

95.677

100

0.957

  recA Acinetobacter baylyi ADP1

75.072

99.424

0.746

  recA Acinetobacter baumannii D1279779

75.904

95.677

0.726

  recA Vibrio cholerae strain A1552

74.924

94.236

0.706

  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

94.236

0.706

  recA Glaesserella parasuis strain SC1401

71.053

98.559

0.7

  recA Ralstonia pseudosolanacearum GMI1000

71.951

94.524

0.68

  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669

  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669

  recA Neisseria gonorrhoeae strain FA1090

71.605

93.372

0.669

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594

  recA Helicobacter pylori strain NCTC11637

62.691

94.236

0.591

  recA Helicobacter pylori 26695

62.08

94.236

0.585

  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576

  recA Streptococcus pneumoniae Rx1

57.267

99.135

0.568

  recA Streptococcus pneumoniae TIGR4

57.267

99.135

0.568

  recA Streptococcus pneumoniae R6

57.267

99.135

0.568

  recA Streptococcus pneumoniae D39

57.267

99.135

0.568

  recA Latilactobacillus sakei subsp. sakei 23K

57.817

97.695

0.565

  recA Streptococcus mitis SK321

56.647

99.712

0.565

  recA Streptococcus mitis NCTC 12261

60.062

93.084

0.559

  recA Streptococcus mutans UA159

59.692

93.66

0.559

  recA Streptococcus pyogenes NZ131

58.537

94.524

0.553

  recA Lactococcus lactis subsp. cremoris KW2

57.585

93.084

0.536

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

93.948

0.527


Multiple sequence alignment