Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GVI68_RS16395 Genome accession   NZ_CP066108
Coordinates   3433641..3434699 (-) Length   352 a.a.
NCBI ID   WP_015571667.1    Uniprot ID   A0A837F5V8
Organism   Enterobacter hormaechei strain Eho-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3428641..3439699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI68_RS16380 (GVI68_16340) csrA 3429885..3430070 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  GVI68_RS16385 (GVI68_16345) alaS 3430312..3432939 (-) 2628 WP_006811715.1 alanine--tRNA ligase -
  GVI68_RS16390 (GVI68_16350) recX 3433071..3433571 (-) 501 WP_032674021.1 recombination regulator RecX -
  GVI68_RS16395 (GVI68_16355) recA 3433641..3434699 (-) 1059 WP_015571667.1 recombinase RecA Machinery gene
  GVI68_RS16400 (GVI68_16360) pncC 3434789..3435286 (-) 498 WP_006811718.1 nicotinamide-nucleotide amidase -
  GVI68_RS16405 (GVI68_16365) - 3435417..3436295 (-) 879 WP_006811719.1 metal ABC transporter substrate-binding protein -
  GVI68_RS16410 (GVI68_16370) - 3436310..3437170 (-) 861 WP_006811720.1 metal ABC transporter permease -
  GVI68_RS16415 (GVI68_16375) - 3437167..3437820 (-) 654 WP_006811721.1 ATP-binding cassette domain-containing protein -
  GVI68_RS16420 (GVI68_16380) mltB 3438131..3439231 (-) 1101 WP_006811722.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37804.24 Da        Isoelectric Point: 4.8095

>NTDB_id=517452 GVI68_RS16395 WP_015571667.1 3433641..3434699(-) (recA) [Enterobacter hormaechei strain Eho-7]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDGADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=517452 GVI68_RS16395 WP_015571667.1 3433641..3434699(-) (recA) [Enterobacter hormaechei strain Eho-7]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACGGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGTCGTATCGTAGAAATCTACGGTCCGGAATCCTCGGGTAAAACCACCCTGACGTTGCAGGTT
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGATCCGGTCTATGCCCGTAA
GCTGGGCGTTGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATTTGTGACGCGCTGG
CGCGTTCAGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGCTGACGCCTAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTCATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGAGATAACGTGGTCGGT
AGCGAAACCCGCGTGAAGGTGGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGTGACAAAATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAACTCCTGCTGAACAACCAGGACTCTAAACCTGATTTCGTGGTCGACGGCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837F5V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

94.034

0.793
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

94.034

0.793
  recA Pseudomonas stutzeri DSM 10701

73.121

98.295

0.719
  recA Acinetobacter baumannii D1279779

74.924

92.898

0.696
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

68.966

98.864

0.682
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Streptococcus mitis SK321

59.312

99.148

0.588
  recA Helicobacter pylori strain NCTC11637

60.831

95.739

0.582
  recA Helicobacter pylori 26695

60.534

95.739

0.58
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

92.045

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

94.318

0.557