Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6I28_RS10985 Genome accession   NZ_CP066062
Coordinates   2279495..2280541 (+) Length   348 a.a.
NCBI ID   WP_002472399.1    Uniprot ID   A0A2K4FG18
Organism   Staphylococcus pettenkoferi strain FDAARGOS_1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2274495..2285541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I28_RS10960 (I6I28_10960) ymfI 2275138..2275842 (+) 705 WP_049405453.1 elongation factor P 5-aminopentanone reductase -
  I6I28_RS10965 (I6I28_10965) - 2275989..2276831 (+) 843 WP_049405450.1 YmfK family protein -
  I6I28_RS10970 (I6I28_10970) - 2276862..2277254 (+) 393 WP_103370293.1 helix-turn-helix domain-containing protein -
  I6I28_RS10975 (I6I28_10975) pgsA 2277303..2277884 (+) 582 WP_049405448.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I28_RS10980 (I6I28_10980) - 2278179..2279342 (+) 1164 WP_103370292.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  I6I28_RS10985 (I6I28_10985) recA 2279495..2280541 (+) 1047 WP_002472399.1 recombinase RecA Machinery gene
  I6I28_RS10990 (I6I28_10990) rny 2280859..2282418 (+) 1560 WP_049410607.1 ribonuclease Y -
  I6I28_RS10995 (I6I28_10995) - 2282458..2283777 (-) 1320 WP_232620119.1 ISL3 family transposase -
  I6I28_RS11000 (I6I28_11000) - 2284179..2284397 (-) 219 WP_002472448.1 hypothetical protein -
  I6I28_RS11005 (I6I28_11005) - 2284628..2285419 (+) 792 WP_049405441.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37698.69 Da        Isoelectric Point: 4.9352

>NTDB_id=517031 I6I28_RS10985 WP_002472399.1 2279495..2280541(+) (recA) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKKGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVEMVVVDSVAALTPKAEIEGEMGD
AHVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSIRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISKEGELLDLGVANDVVDKSGAWYSYNGERMGQGKENVKNFLKENPEIRQDIDD
KLREKLGIFDGDVKEEEEEAPSSLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=517031 I6I28_RS10985 WP_002472399.1 2279495..2280541(+) (recA) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
TTGGATAATGAACGTCAAAAAGCTCTAGATACAGTTATTAAAAATATGGAAAAGTCTTTCGGTAAAGGCGCAGTTATGAA
GCTCGGAGATAATAAAGGACGTAAAGTATCAAGCGTATCAAGTGGTTCAGTCACTTTGGATAATGCGCTTGGTGTAGGTG
GCTATCCTAAAGGCCGTATCATCGAAATCTACGGTCCTGAAAGTTCAGGTAAGACGACTGTAGCACTTCATGCCATCGCT
GAAGTTCAGAAAAAAGGTGGGGTAGCAGCGTTCATCGACGCAGAGCACGCGTTAGACCCTGTCTATGCTGAAGCATTAGG
TGTCGATATCGATAACCTTTACTTGTCACAACCAGACCATGGGGAACAAGGTCTTGAAATTGCAGAAGCATTCGTACGAA
GCGGTGCTGTAGAAATGGTTGTTGTCGACTCTGTTGCGGCTCTTACTCCGAAAGCAGAAATTGAAGGCGAAATGGGCGAT
GCTCACGTCGGTTTACAAGCTCGCTTAATGTCTCAAGCATTACGTAAGCTTTCTGCAGCGATTTCTAAATCAAATACAAC
TGCAATCTTTATCAACCAAATCCGTGAAAAAGTCGGTGTGATGTTCGGTAACCCTGAAACTACACCAGGTGGACGTGCCT
TGAAGTTCTACAGTTCCATTCGTCTTGAAGTTCGCCGTGCAGAGCAGTTGAAACAAGGCCAAGATATCGTTGGTAACCGT
ACGAAGATTAAAGTTGTGAAGAACAAAGTGGCACCTCCATTCAAAGTGGCAGAAGTAGACATCATGTATGGTCAAGGTAT
TTCTAAAGAAGGTGAACTTCTTGATCTCGGTGTTGCTAATGACGTGGTAGATAAATCTGGTGCTTGGTATTCTTACAATG
GCGAACGTATGGGTCAAGGTAAAGAGAACGTTAAGAACTTCTTGAAAGAAAATCCTGAAATTAGACAAGATATTGATGAT
AAATTACGTGAAAAACTAGGAATCTTCGATGGCGATGTTAAAGAAGAGGAAGAAGAAGCTCCGTCATCACTTTTCGATGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4FG18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.153

93.678

0.704
  recA Latilactobacillus sakei subsp. sakei 23K

70.149

96.264

0.675
  recA Streptococcus mutans UA159

65.714

100

0.661
  recA Streptococcus mitis SK321

65.517

100

0.655
  recA Streptococcus pneumoniae D39

66.569

97.989

0.652
  recA Streptococcus pneumoniae Rx1

66.569

97.989

0.652
  recA Streptococcus pneumoniae R6

66.569

97.989

0.652
  recA Streptococcus pneumoniae TIGR4

66.569

97.989

0.652
  recA Streptococcus pyogenes NZ131

68.085

94.54

0.644
  recA Streptococcus mitis NCTC 12261

66.967

95.69

0.641
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.115

0.624
  recA Acinetobacter baumannii D1279779

62.356

100

0.624
  recA Acinetobacter baylyi ADP1

61.96

99.713

0.618
  recA Neisseria gonorrhoeae MS11

62.139

99.425

0.618
  recA Neisseria gonorrhoeae MS11

62.139

99.425

0.618
  recA Neisseria gonorrhoeae strain FA1090

62.139

99.425

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.438

94.54

0.609
  recA Vibrio cholerae strain A1552

64.11

93.678

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.11

93.678

0.601
  recA Helicobacter pylori 26695

63.11

94.253

0.595
  recA Helicobacter pylori strain NCTC11637

62.805

94.253

0.592
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.943

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.115

0.575
  recA Pseudomonas stutzeri DSM 10701

59.88

95.977

0.575
  recA Glaesserella parasuis strain SC1401

61.61

92.816

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

91.954

0.566