Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6H96_RS05005 Genome accession   NZ_CP066050
Coordinates   1005845..1006930 (+) Length   361 a.a.
NCBI ID   WP_012091915.1    Uniprot ID   -
Organism   Brucella anthropi strain FDAARGOS_1039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1000845..1011930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H96_RS04985 (I6H96_04985) - 1001102..1002532 (+) 1431 WP_012091913.1 DegQ family serine endoprotease -
  I6H96_RS04990 (I6H96_04990) - 1002625..1003941 (+) 1317 WP_012091914.1 replication-associated recombination protein A -
  I6H96_RS04995 (I6H96_04995) - 1004204..1004788 (+) 585 WP_010659931.1 transglycosylase SLT domain-containing protein -
  I6H96_RS05000 (I6H96_05000) - 1004886..1005551 (+) 666 WP_010659932.1 OmpA family protein -
  I6H96_RS05005 (I6H96_05005) recA 1005845..1006930 (+) 1086 WP_012091915.1 recombinase RecA Machinery gene
  I6H96_RS05010 (I6H96_05010) alaS 1007257..1009914 (+) 2658 WP_012091916.1 alanine--tRNA ligase -
  I6H96_RS05015 (I6H96_05015) - 1009956..1010306 (-) 351 WP_012091917.1 antibiotic biosynthesis monooxygenase -
  I6H96_RS05020 (I6H96_05020) - 1010303..1010632 (-) 330 WP_010659936.1 NIPSNAP family protein -
  I6H96_RS05025 (I6H96_05025) - 1010714..1011403 (+) 690 WP_012091918.1 winged helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38758.26 Da        Isoelectric Point: 4.9696

>NTDB_id=516820 I6H96_RS05005 WP_012091915.1 1005845..1006930(+) (recA) [Brucella anthropi strain FDAARGOS_1039]
MSQNSLRLVEENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIEIETVPTGSLSLDIALGVGGLPKGRIVEIYGPES
SGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
SIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYL
KDNPEVAREIETTLRQNAGLIAEQFLEDGGPEDDAGDAAEM

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=516820 I6H96_RS05005 WP_012091915.1 1005845..1006930(+) (recA) [Brucella anthropi strain FDAARGOS_1039]
ATGTCTCAGAATTCATTGCGACTTGTTGAGGAAAATTCAGTGGACAAGACTAAGGCTCTCGATGCGGCATTGTCGCAAAT
CGAAAGGGCGTTCGGTAAGGGCTCGATCATGCGTCTGGGGAAAAATGCCCCGGTTATCGAGATCGAAACTGTTCCGACCG
GCTCGCTTTCTCTGGACATCGCGCTGGGTGTCGGCGGCTTGCCCAAAGGACGTATTGTTGAGATTTACGGACCGGAAAGC
TCCGGTAAGACGACACTCGCGCTGCACACGATTGCGGAAGCACAGAAGAAGGGCGGTATCTGTGCATTCGTCGATGCGGA
ACATGCGCTTGATCCTGTCTATGCACGCAAGCTGGGTGTCGATCTGGAAAACTTGCTGATTTCGCAGCCAGATACGGGTG
AGCAGGCACTTGAAATTACCGACACGCTTGTGCGTTCGGGCGCCATCGACGTTCTCGTCGTCGACTCCGTCGCAGCCTTG
ACGCCACGTGCGGAAATCGAAGGCGAAATGGGTGACTCCTTGCCTGGTCTTCAGGCTCGTCTTATGAGCCAGGCGCTGCG
CAAGCTTACCGCATCGATCTCGCGTTCGAACTGTATGGTGATCTTCATCAACCAGATTCGTATGAAGATCGGTGTGATGT
TCGGTTCGCCGGAAACGACGACTGGCGGTAACGCTCTCAAGTTCTATGCTTCGGTTCGTCTCGATATTCGCCGTATCGGT
TCGATCAAGGAGCGCGACGAAGTTGTTGGCAACCAGACCCGCGTGAAGGTCGTCAAGAACAAGCTTGCGCCGCCCTTCAA
GCAGGTCGAATTTGACATCATGTACGGTGCTGGCGTTTCCAAGACCGGTGAACTGGTCGATCTTGGCGTAAAGGCCGGTG
TCGTCGAGAAGTCCGGTGCGTGGTTCTCGTATAATTCTCAGCGACTGGGACAAGGCCGTGAAAACGCCAAGCAATATCTC
AAGGACAACCCGGAAGTGGCCCGCGAGATCGAAACCACGCTTCGTCAGAATGCCGGTTTGATTGCCGAACAGTTCCTCGA
AGATGGCGGACCAGAAGACGATGCGGGTGACGCTGCCGAAATGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

68.497

95.845

0.657
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.448

92.798

0.654
  recA Vibrio cholerae strain A1552

70.448

92.798

0.654
  recA Ralstonia pseudosolanacearum GMI1000

71.429

91.136

0.651
  recA Glaesserella parasuis strain SC1401

65.903

96.676

0.637
  recA Acinetobacter baumannii D1279779

71.429

89.197

0.637
  recA Neisseria gonorrhoeae MS11

66.092

96.399

0.637
  recA Neisseria gonorrhoeae MS11

66.092

96.399

0.637
  recA Neisseria gonorrhoeae strain FA1090

66.092

96.399

0.637
  recA Pseudomonas stutzeri DSM 10701

70.405

88.92

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.361

90.582

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.081

95.291

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

90.305

0.59
  recA Helicobacter pylori 26695

64.724

90.305

0.584
  recA Helicobacter pylori strain NCTC11637

64.417

90.305

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

90.305

0.565
  recA Streptococcus mitis SK321

61.631

91.69

0.565
  recA Streptococcus mitis NCTC 12261

61.329

91.69

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

88.643

0.557
  recA Streptococcus mutans UA159

59.467

93.629

0.557
  recA Streptococcus pneumoniae TIGR4

60.423

91.69

0.554
  recA Streptococcus pneumoniae D39

60.423

91.69

0.554
  recA Streptococcus pneumoniae Rx1

60.423

91.69

0.554
  recA Streptococcus pneumoniae R6

60.423

91.69

0.554
  recA Streptococcus pyogenes NZ131

60.486

91.136

0.551
  recA Lactococcus lactis subsp. cremoris KW2

57.988

93.629

0.543