Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6I22_RS09105 Genome accession   NZ_CP066045
Coordinates   1893280..1894323 (+) Length   347 a.a.
NCBI ID   WP_014819877.1    Uniprot ID   I4CS11
Organism   Stutzerimonas stutzeri strain FDAARGOS_1065     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1888280..1899323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I22_RS09090 (I6I22_09085) mutS 1888439..1891018 (-) 2580 WP_101274225.1 DNA mismatch repair protein MutS -
  I6I22_RS09095 (I6I22_09090) - 1891489..1892601 (+) 1113 WP_101274224.1 acyltransferase family protein -
  I6I22_RS09100 (I6I22_09095) - 1892699..1893196 (+) 498 WP_013982301.1 CinA family protein -
  I6I22_RS09105 (I6I22_09100) recA 1893280..1894323 (+) 1044 WP_014819877.1 recombinase RecA Machinery gene
  I6I22_RS09110 (I6I22_09105) recX 1894329..1894796 (+) 468 WP_041013536.1 recombination regulator RecX -
  I6I22_RS09115 (I6I22_09110) - 1894908..1895999 (-) 1092 WP_101274223.1 LOG family protein -
  I6I22_RS09120 (I6I22_09115) - 1896115..1897524 (-) 1410 WP_101274222.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37130.54 Da        Isoelectric Point: 5.3078

>NTDB_id=516754 I6I22_RS09105 WP_014819877.1 1893280..1894323(+) (recA) [Stutzerimonas stutzeri strain FDAARGOS_1065]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKYLEDNPEIGQEIEQ
QIRDKLLVVAPNTKANPVTEDLADADL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=516754 I6I22_RS09105 WP_014819877.1 1893280..1894323(+) (recA) [Stutzerimonas stutzeri strain FDAARGOS_1065]
ATGGACGAGAACAAGAAGCGCGCCCTGGCTGCAGCCCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGTGCAGTGATGCG
CATGGGCGATCATGATCGCCAGGCCATTCCGGCCATTTCTACCGGCTCGCTGGGCCTGGATATCGCGCTTGGAATTGGCG
GCCTGCCCAAGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACTCTGACCCTGTCGGTAATCGCT
GAAGCGCAGAAGATGGGCGCCACCTGTGCTTTCGTCGATGCCGAGCACGCGCTGGACCCGGACTACGCCGGCAAACTGGG
CGTGAACGTCGACGACCTGCTGGTTTCGCAGCCTGATACCGGCGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTGGATGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAT
ACGCACGTCGGCCTGCAGGCCCGTCTGATGTCTCAGGCGCTGCGCAAGATCACGGGCAATATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATTCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCGCCGCCCTTCCGTCAGGCTGAGTTCCAGATCCTCTATGGCAAGGGCAT
CTACCGCAATGGCGAGGTCATCGATCTCGGCGTGCAGCAGGGACTGGTGGAGAAGTCCGGCGCCTGGTACGCCTACAAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTATCTGGAAGACAATCCGGAGATCGGTCAGGAGATCGAGCAA
CAGATCCGCGACAAGTTGCTGGTAGTTGCGCCAAACACCAAGGCCAACCCGGTTACCGAAGATCTGGCTGACGCCGATCT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4CS11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

95.677

100

0.957
  recA Acinetobacter baylyi ADP1

75.072

99.424

0.746
  recA Acinetobacter baumannii D1279779

75.904

95.677

0.726
  recA Vibrio cholerae strain A1552

74.924

94.236

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

94.236

0.706
  recA Glaesserella parasuis strain SC1401

71.053

98.559

0.7
  recA Ralstonia pseudosolanacearum GMI1000

71.951

94.524

0.68
  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669
  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669
  recA Neisseria gonorrhoeae strain FA1090

71.605

93.372

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Helicobacter pylori strain NCTC11637

62.691

94.236

0.591
  recA Helicobacter pylori 26695

62.08

94.236

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus pneumoniae Rx1

57.267

99.135

0.568
  recA Streptococcus pneumoniae TIGR4

57.267

99.135

0.568
  recA Streptococcus pneumoniae R6

57.267

99.135

0.568
  recA Streptococcus pneumoniae D39

57.267

99.135

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

57.817

97.695

0.565
  recA Streptococcus mitis SK321

56.647

99.712

0.565
  recA Streptococcus mitis NCTC 12261

60.062

93.084

0.559
  recA Streptococcus mutans UA159

59.692

93.66

0.559
  recA Streptococcus pyogenes NZ131

58.537

94.524

0.553
  recA Lactococcus lactis subsp. cremoris KW2

57.585

93.084

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

93.948

0.527