Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6H83_RS04835 Genome accession   NZ_CP066026
Coordinates   954792..955871 (-) Length   359 a.a.
NCBI ID   WP_040346130.1    Uniprot ID   A0A4P1JUG3
Organism   Brevundimonas diminuta strain FDAARGOS_1026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949792..960871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H83_RS04820 (I6H83_04820) - 950393..950944 (+) 552 WP_088410389.1 DUF2939 domain-containing protein -
  I6H83_RS04825 (I6H83_04825) alaS 951131..953776 (-) 2646 WP_128718713.1 alanine--tRNA ligase -
  I6H83_RS04830 (I6H83_04830) rraA 953909..954391 (-) 483 WP_128718712.1 ribonuclease E activity regulator RraA -
  I6H83_RS04835 (I6H83_04835) recA 954792..955871 (-) 1080 WP_040346130.1 recombinase RecA Machinery gene
  I6H83_RS04840 (I6H83_04840) - 956040..957566 (-) 1527 WP_128718711.1 CYTH and CHAD domain-containing protein -
  I6H83_RS04845 (I6H83_04845) - 957647..959227 (+) 1581 WP_003166027.1 bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein -
  I6H83_RS04850 (I6H83_04850) - 959376..960434 (-) 1059 WP_128718710.1 CaiB/BaiF CoA transferase family protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38112.70 Da        Isoelectric Point: 5.3365

>NTDB_id=516549 I6H83_RS04835 WP_040346130.1 954792..955871(-) (recA) [Brevundimonas diminuta strain FDAARGOS_1026]
MSQAALKLVGKEDGDKQRALEAAIAQIDRAFGKGSVMKLGKAGQVAEIESVSTGSLGLDMALGIGGLPVGRVIEVFGPES
SGKTTLALHTVAEVQKKGGVAAFVDAEHALDPVYAQKLGVNLDDLLVSQPDAGEQALEIVDTLVRSGAVDIVVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTG
AIKNRDEVVGNTTRVKVVKNKVAPPFREVIFDIMYGEGISKIGEIIDLGVKANIIEKSGSWFSYDSTRIGQGRENAKEFL
KNNPDMALAIEKAVRQSTAKIADDMLGAPEPDEGQDLEG

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=516549 I6H83_RS04835 WP_040346130.1 954792..955871(-) (recA) [Brevundimonas diminuta strain FDAARGOS_1026]
ATGTCACAGGCGGCACTGAAGCTCGTGGGTAAAGAAGACGGCGACAAACAACGCGCTCTAGAGGCGGCGATCGCGCAGAT
CGATCGCGCCTTCGGCAAGGGCTCGGTCATGAAATTGGGCAAGGCCGGACAGGTGGCCGAGATCGAAAGCGTCTCGACCG
GCTCTCTGGGTCTCGACATGGCGCTCGGCATCGGCGGCCTGCCGGTCGGCCGGGTGATCGAGGTGTTCGGCCCCGAATCC
TCGGGCAAGACGACGCTCGCCCTGCACACCGTGGCCGAGGTCCAGAAGAAGGGCGGCGTGGCCGCCTTCGTCGACGCCGA
ACACGCGCTGGACCCCGTCTACGCCCAGAAGCTGGGCGTCAACCTGGACGACCTGCTGGTGTCGCAGCCCGACGCCGGCG
AGCAGGCGCTGGAGATCGTCGACACCCTGGTGCGCTCGGGCGCCGTGGACATCGTGGTGGTCGACTCCGTCGCCGCCCTG
ACGCCCCGCGCTGAGATCGAGGGCGAGATGGGCGACAGCCTGCCCGGCCTTCAGGCCCGCCTGATGTCGCAGGCCCTGCG
TAAGCTGACGGCCTCCATCTCCAAGTCGAAGTGCATCGTCCTGTTCATCAACCAGATCCGTCACAAGATCGGCGTCATGT
ACGGCTCGCCGGAAACCACGACGGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGC
GCGATCAAGAACCGCGACGAGGTGGTCGGCAACACCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCCG
CGAGGTCATCTTCGACATCATGTACGGCGAAGGCATCTCCAAGATCGGCGAGATCATCGACCTGGGCGTCAAGGCCAACA
TCATCGAGAAGTCCGGCTCCTGGTTCTCCTACGACTCCACCCGCATCGGTCAGGGTCGCGAGAACGCCAAGGAGTTCCTG
AAGAACAACCCCGACATGGCCCTCGCCATCGAAAAGGCGGTCCGCCAGTCCACGGCCAAGATCGCCGACGACATGCTGGG
CGCGCCCGAGCCGGACGAAGGTCAGGATCTGGAGGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P1JUG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.069

92.758

0.641
  recA Glaesserella parasuis strain SC1401

67.359

93.872

0.632
  recA Vibrio cholerae strain A1552

62.323

98.329

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.323

98.329

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

68.323

89.694

0.613
  recA Pseudomonas stutzeri DSM 10701

67.802

89.972

0.61
  recA Neisseria gonorrhoeae MS11

68.224

89.415

0.61
  recA Neisseria gonorrhoeae MS11

68.224

89.415

0.61
  recA Neisseria gonorrhoeae strain FA1090

68.224

89.415

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.899

96.1

0.604
  recA Acinetobacter baylyi ADP1

62.717

96.379

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.361

91.086

0.604
  recA Helicobacter pylori strain NCTC11637

63.158

95.265

0.602
  recA Helicobacter pylori 26695

63.158

95.265

0.602
  recA Acinetobacter baumannii D1279779

64.506

90.251

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

63.24

89.415

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

91.643

0.56
  recA Streptococcus pyogenes NZ131

59.337

92.479

0.549
  recA Streptococcus mitis NCTC 12261

60.308

90.529

0.546
  recA Streptococcus mitis SK321

60.308

90.529

0.546
  recA Streptococcus pneumoniae Rx1

60

90.529

0.543
  recA Streptococcus pneumoniae D39

60

90.529

0.543
  recA Streptococcus pneumoniae R6

60

90.529

0.543
  recA Streptococcus pneumoniae TIGR4

60

90.529

0.543
  recA Streptococcus mutans UA159

57.784

93.036

0.538
  recA Lactococcus lactis subsp. cremoris KW2

56.973

93.872

0.535