Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6H93_RS03115 Genome accession   NZ_CP066016
Coordinates   647203..648252 (-) Length   349 a.a.
NCBI ID   WP_000344169.1    Uniprot ID   N9L2B2
Organism   Acinetobacter baumannii strain FDAARGOS_1036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 642203..653252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H93_RS03080 (I6H93_03080) - 642444..642947 (+) 504 WP_001037943.1 OmpH family outer membrane protein -
  I6H93_RS03085 (I6H93_03085) lpxD 642952..644022 (+) 1071 WP_000868109.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  I6H93_RS03090 (I6H93_03090) fabZ 644029..644514 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6H93_RS03095 (I6H93_03095) lpxA 644511..645299 (+) 789 WP_000064875.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  I6H93_RS03100 (I6H93_03100) - 645355..646239 (-) 885 WP_001178068.1 YbgF trimerization domain-containing protein -
  I6H93_RS03110 (I6H93_03110) - 646667..647149 (-) 483 WP_000476758.1 regulatory protein RecX -
  I6H93_RS03115 (I6H93_03115) recA 647203..648252 (-) 1050 WP_000344169.1 recombinase RecA Machinery gene
  I6H93_RS03120 (I6H93_03120) - 648398..648838 (-) 441 WP_000040963.1 RNA-binding S4 domain-containing protein -
  I6H93_RS03125 (I6H93_03125) - 648822..649508 (-) 687 WP_001045474.1 HAD-IA family hydrolase -
  I6H93_RS03130 (I6H93_03130) - 649680..650039 (+) 360 WP_000798370.1 YcgJ family protein -
  I6H93_RS03135 (I6H93_03135) - 650137..650373 (+) 237 WP_000525043.1 hypothetical protein -
  I6H93_RS03140 (I6H93_03140) - 650488..650781 (+) 294 WP_000689660.1 hypothetical protein -
  I6H93_RS03145 (I6H93_03145) - 650833..651369 (-) 537 WP_000573228.1 GNAT family N-acetyltransferase -
  I6H93_RS03150 (I6H93_03150) gigD 651415..651864 (-) 450 WP_001046785.1 Lrp/AsnC family transcriptional regulator GigD -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37891.25 Da        Isoelectric Point: 4.7769

>NTDB_id=516360 I6H93_RS03115 WP_000344169.1 647203..648252(-) (recA) [Acinetobacter baumannii strain FDAARGOS_1036]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENTQIAEEIER
NIREQLLTTGTNGAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=516360 I6H93_RS03115 WP_000344169.1 647203..648252(-) (recA) [Acinetobacter baumannii strain FDAARGOS_1036]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTACAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCCTTCATTGATGCTGAGCACGCCCTAGACCCTCAATATGCACGCAAACTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAATGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTGGCTGCACTTACACCTAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAAGCGCGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAATGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCAGTACAACAGGATATCGTACAGAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTAATTCGCTATTTTGAAGAAAATACTCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATGGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGATCTTTTATT
AGAATCGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9L2B2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

99.713

100

0.997

  recA Acinetobacter baylyi ADP1

93.084

99.427

0.926

  recA Pseudomonas stutzeri DSM 10701

75.602

95.129

0.719

  recA Vibrio cholerae strain A1552

73.7

93.696

0.691

  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691

  recA Ralstonia pseudosolanacearum GMI1000

70.517

94.269

0.665

  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665

  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653

  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653

  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605

  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602

  recA Helicobacter pylori 26695

63.914

93.696

0.599

  recA Streptococcus pyogenes NZ131

58.924

100

0.596

  recA Streptococcus mitis SK321

60.411

97.708

0.59

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587

  recA Streptococcus pneumoniae D39

61.963

93.41

0.579

  recA Streptococcus mitis NCTC 12261

61.963

93.41

0.579

  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579

  recA Streptococcus pneumoniae R6

61.963

93.41

0.579

  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579

  recA Streptococcus mutans UA159

61.585

93.983

0.579

  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576

  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544

  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.977

0.539