Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JCQ35_RS05270 Genome accession   NZ_CP065960
Coordinates   995325..996338 (-) Length   337 a.a.
NCBI ID   WP_049319417.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDK8D55P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 990325..1001338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCQ35_RS05245 (JCQ35_05245) - 990667..991152 (-) 486 WP_198472167.1 GNAT family N-acetyltransferase -
  JCQ35_RS05250 (JCQ35_05250) - 991275..991685 (-) 411 Protein_1008 NmrA family NAD(P)-binding protein -
  JCQ35_RS05255 (JCQ35_05255) - 991882..993059 (+) 1178 Protein_1009 IS256 family transposase -
  JCQ35_RS05260 (JCQ35_05260) - 993023..993349 (-) 327 WP_025905369.1 hypothetical protein -
  JCQ35_RS05265 (JCQ35_05265) rny 993547..995106 (-) 1560 WP_025905368.1 ribonuclease Y -
  JCQ35_RS05270 (JCQ35_05270) recA 995325..996338 (-) 1014 WP_049319417.1 recombinase RecA Machinery gene
  JCQ35_RS05275 (JCQ35_05275) - 996548..997696 (-) 1149 WP_025905366.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  JCQ35_RS05280 (JCQ35_05280) pgsA 997754..998335 (-) 582 WP_037587820.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JCQ35_RS05285 (JCQ35_05285) - 998400..998795 (-) 396 WP_037587819.1 helix-turn-helix domain-containing protein -
  JCQ35_RS05290 (JCQ35_05290) - 998816..999631 (-) 816 WP_025905363.1 YmfK family protein -
  JCQ35_RS05295 (JCQ35_05295) ymfI 999648..1000352 (-) 705 WP_025905362.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36532.45 Da        Isoelectric Point: 5.0970

>NTDB_id=515736 JCQ35_RS05270 WP_049319417.1 995325..996338(-) (recA) [Mammaliicoccus sciuri strain GDK8D55P]
MEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEAQRQGGVAAFIDAE
HALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALR
KLSGAISKSNTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNRTKIKVVKNKVAPPFR
VAEVDIMYGEGISREGELIDLAVEFDIVDKSGAWYSYNGERMGQGKENVKTYLKENPAIIEEIDGILRDQLGFNGKKKEE
AKKEEKPNEPEQETLLD

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=515736 JCQ35_RS05270 WP_049319417.1 995325..996338(-) (recA) [Mammaliicoccus sciuri strain GDK8D55P]
ATGGAAAAATCCTTTGGTAAAGGGGCAGTAATGAAGCTAGGGGATAATACAAGTAGAGAAGTATCAGCAGTTTCTAGTGG
CTCAATCACACTTGATAAAGCATTAGGTGTGGGTGGTTACCCTAAAGGACGTATCATTGAAATATATGGTCCAGAAAGTT
CTGGTAAAACAACAGTAGCTTTACACGCTATCGCTGAAGCACAAAGACAAGGTGGCGTAGCTGCTTTTATTGATGCTGAG
CACGCACTAGATCCTGTTTATGCTAAAAACTTAGGCGTAGATATTGATAACCTATATTTATCACAACCTGACCACGGTGA
ACAAGGTTTAGAGATTGCAGAAGCATTTGTTCGTAGTGGTGCAGTTGATATTGTTATTGTCGACTCAGTAGCTGCATTAA
CACCTAAAGCTGAAATTGAAGGTGAAATGGGAGATACACACGTTGGCTTACAAGCAAGATTAATGAGTCAAGCTTTACGT
AAATTATCAGGTGCTATTTCTAAATCAAATACAACAGCTATCTTTATCAACCAAATTCGTGAAAAAGTTGGCGTTATGTT
CGGTAATCCTGAGGTAACACCAGGTGGACGTGCGTTGAAATTCTATAGTTCTGTTCGTTTAGAAGTACGTCGTGCTGAAC
AATTGAAACAAGGTCAAGAAGTAGTGGGTAACCGTACTAAAATTAAAGTTGTTAAAAACAAAGTTGCGCCTCCATTTAGA
GTAGCAGAAGTTGATATTATGTACGGTGAAGGTATTTCACGTGAAGGTGAATTAATCGACTTAGCAGTTGAATTTGATAT
TGTAGATAAATCAGGTGCTTGGTATTCATATAATGGAGAACGTATGGGTCAAGGTAAAGAAAACGTTAAGACTTACTTAA
AAGAAAACCCAGCTATTATTGAAGAAATTGATGGAATCTTAAGAGATCAATTAGGCTTTAACGGTAAGAAGAAAGAAGAA
GCTAAAAAAGAAGAAAAACCTAATGAGCCTGAACAAGAAACTTTATTAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(1-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.389

93.175

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

69.846

96.439

0.674
  recA Streptococcus mutans UA159

65.68

100

0.659
  recA Streptococcus pneumoniae Rx1

65.089

100

0.653
  recA Streptococcus pneumoniae TIGR4

65.089

100

0.653
  recA Streptococcus pneumoniae R6

65.089

100

0.653
  recA Streptococcus pneumoniae D39

65.089

100

0.653
  recA Streptococcus mitis NCTC 12261

66.364

97.923

0.65
  recA Streptococcus mitis SK321

66.061

97.923

0.647
  recA Acinetobacter baumannii D1279779

65.861

98.22

0.647
  recA Streptococcus pyogenes NZ131

68.354

93.769

0.641
  recA Acinetobacter baylyi ADP1

64.955

98.22

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.964

98.813

0.632
  recA Neisseria gonorrhoeae MS11

63.964

98.813

0.632
  recA Neisseria gonorrhoeae MS11

63.964

98.813

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.562

94.065

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.456

93.769

0.623
  recA Helicobacter pylori strain NCTC11637

62.874

99.11

0.623
  recA Helicobacter pylori 26695

62.575

99.11

0.62
  recA Vibrio cholerae strain A1552

66.238

92.285

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.238

92.285

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.65

93.175

0.602
  recA Glaesserella parasuis strain SC1401

60.661

98.813

0.599
  recA Pseudomonas stutzeri DSM 10701

64.63

92.285

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.83

94.065

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.171

90.208

0.561