Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MODMU_RS20345 Genome accession   NC_017955
Coordinates   4289191..4290231 (-) Length   346 a.a.
NCBI ID   WP_014742266.1    Uniprot ID   -
Organism   Modestobacter italicus     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4284191..4295231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MODMU_RS20320 (MODMU_4299) - 4284834..4285733 (+) 900 WP_014742261.1 glutamate ABC transporter substrate-binding protein -
  MODMU_RS20325 (MODMU_4300) - 4285806..4286453 (+) 648 WP_014742262.1 amino acid ABC transporter permease -
  MODMU_RS20330 (MODMU_4301) - 4286450..4287340 (+) 891 WP_014742263.1 amino acid ABC transporter permease -
  MODMU_RS20335 (MODMU_4302) - 4287497..4287913 (+) 417 WP_014742264.1 hypothetical protein -
  MODMU_RS29180 (MODMU_4303) - 4288094..4289182 (-) 1089 WP_231851690.1 regulatory protein RecX -
  MODMU_RS20345 (MODMU_4304) recA 4289191..4290231 (-) 1041 WP_014742266.1 recombinase RecA Machinery gene
  MODMU_RS20350 (MODMU_4305) - 4290389..4290781 (-) 393 WP_014742267.1 helix-turn-helix domain-containing protein -
  MODMU_RS20355 (MODMU_4307) - 4290883..4291740 (+) 858 WP_014742268.1 NmrA family NAD(P)-binding protein -
  MODMU_RS20360 (MODMU_4308) - 4291763..4291957 (-) 195 WP_014742269.1 DUF3046 domain-containing protein -
  MODMU_RS20365 (MODMU_4309) - 4292111..4293400 (-) 1290 WP_014742270.1 MFS transporter -
  MODMU_RS20370 (MODMU_4310) - 4293465..4294640 (+) 1176 WP_014742271.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36681.88 Da        Isoelectric Point: 4.9233

>NTDB_id=51516 MODMU_RS20345 WP_014742266.1 4289191..4290231(-) (recA) [Modestobacter italicus]
MATLDRDKALDMALAQIDKQFGKGSVMRLGDSPEVAMKVIPTGSIALDIALGVGGLPRGRVVEVYGPEASGKTTVALHAV
ANAQAAGGIVAFVDAEHALDPDYARAIGVDTDALLISQPDTGEQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITGALSNSGTTCIFINQLREKVGVVYGSPEVTTGGRALKFYSSVRLDVRRIETLKQGTDAVGS
RVRIKVVKNKVAAPFKQAELDLIWGTGFSREGGLIDIGVEQGFVRKSGAWYTYDGDQLGQGKENARNFLRDNPDLADEIE
KKIKEKLGIGVAKVDPADVAAEPADF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=51516 MODMU_RS20345 WP_014742266.1 4289191..4290231(-) (recA) [Modestobacter italicus]
ATGGCAACGCTCGACCGCGACAAGGCCCTCGACATGGCCCTCGCCCAGATCGACAAGCAGTTCGGCAAGGGTTCCGTCAT
GCGCCTGGGCGACTCGCCCGAGGTCGCCATGAAGGTGATCCCGACCGGCTCGATCGCCCTCGACATCGCCCTCGGCGTCG
GCGGCCTGCCGCGTGGCCGGGTGGTCGAGGTCTACGGCCCGGAGGCCTCGGGCAAGACGACGGTCGCCCTGCACGCGGTG
GCCAACGCCCAGGCCGCCGGCGGCATCGTGGCCTTCGTCGACGCCGAGCACGCGCTCGACCCCGACTACGCCCGGGCCAT
CGGCGTCGACACCGACGCCCTGCTGATCAGCCAGCCCGACACCGGTGAGCAGGCGCTGGAGATCGCGGACATGCTGATCC
GCTCCGGCGCGCTCGACCTGATCGTCATCGACTCGGTGGCCGCCCTGGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGC
GACAGCCACGTCGGCCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGATCACCGGTGCGCTGAGCAACTCCGGGAC
GACCTGCATCTTCATCAACCAGCTGCGCGAGAAGGTCGGCGTCGTCTACGGCTCCCCGGAGGTCACCACCGGTGGCCGCG
CGCTGAAGTTCTACTCCTCGGTCCGGCTCGACGTGCGGCGCATCGAGACCCTCAAGCAGGGCACCGACGCGGTCGGCAGC
CGGGTGCGGATCAAGGTCGTCAAGAACAAGGTGGCCGCGCCGTTCAAGCAGGCCGAGCTCGACCTCATCTGGGGCACCGG
CTTCAGCCGTGAGGGCGGCCTCATCGACATCGGAGTGGAGCAGGGCTTCGTCCGCAAGTCCGGTGCCTGGTACACCTACG
ACGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTGCGGGACAACCCCGACCTCGCCGACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCATCGGCGTGGCCAAGGTCGACCCGGCCGACGTCGCCGCCGAGCCGGCCGACTTCTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

62.17

98.555

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

64.615

93.931

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

62.918

95.087

0.598
  recA Vibrio cholerae strain A1552

62.539

93.353

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

93.353

0.584
  recA Acinetobacter baylyi ADP1

62.539

93.353

0.584
  recA Lactococcus lactis subsp. cremoris KW2

59.412

98.266

0.584
  recA Streptococcus mutans UA159

61.398

95.087

0.584
  recA Neisseria gonorrhoeae MS11

61.963

94.22

0.584
  recA Neisseria gonorrhoeae MS11

61.963

94.22

0.584
  recA Neisseria gonorrhoeae strain FA1090

61.963

94.22

0.584
  recA Acinetobacter baumannii D1279779

62.229

93.353

0.581
  recA Ralstonia pseudosolanacearum GMI1000

64.217

90.462

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.35

94.22

0.578
  recA Streptococcus pyogenes NZ131

60.671

94.798

0.575
  recA Streptococcus mitis NCTC 12261

57.681

99.711

0.575
  recA Helicobacter pylori strain NCTC11637

60.308

93.931

0.566
  recA Helicobacter pylori 26695

60.308

93.931

0.566
  recA Streptococcus pneumoniae TIGR4

59.574

95.087

0.566
  recA Streptococcus pneumoniae R6

59.574

95.087

0.566
  recA Streptococcus pneumoniae D39

59.574

95.087

0.566
  recA Streptococcus pneumoniae Rx1

59.574

95.087

0.566
  recA Streptococcus mitis SK321

59.271

95.087

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

92.486

0.552
  recA Glaesserella parasuis strain SC1401

58.385

93.064

0.543
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.623

95.087

0.529

Multiple sequence alignment