Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I8T81_RS07905 Genome accession   NZ_CP065820
Coordinates   1680333..1681385 (-) Length   350 a.a.
NCBI ID   WP_198072536.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675333..1686385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS07870 (I8T81_07870) - 1675569..1676072 (+) 504 WP_086496798.1 OmpH family outer membrane protein -
  I8T81_RS07875 (I8T81_07875) lpxD 1676077..1677147 (+) 1071 WP_191010019.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  I8T81_RS07880 (I8T81_07880) fabZ 1677154..1677639 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I8T81_RS07885 (I8T81_07885) lpxA 1677636..1678424 (+) 789 WP_019458740.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  I8T81_RS07890 (I8T81_07890) - 1678479..1679369 (-) 891 WP_191011751.1 YbgF trimerization domain-containing protein -
  I8T81_RS07900 (I8T81_07900) - 1679797..1680279 (-) 483 WP_198072535.1 regulatory protein RecX -
  I8T81_RS07905 (I8T81_07905) recA 1680333..1681385 (-) 1053 WP_198072536.1 recombinase RecA Machinery gene
  I8T81_RS07910 (I8T81_07910) - 1681531..1681971 (-) 441 WP_004701218.1 RNA-binding S4 domain-containing protein -
  I8T81_RS07915 (I8T81_07915) - 1681955..1682641 (-) 687 WP_004701221.1 HAD-IA family hydrolase -
  I8T81_RS07920 (I8T81_07920) - 1683058..1683348 (+) 291 WP_004701224.1 hypothetical protein -
  I8T81_RS07925 (I8T81_07925) - 1683412..1683936 (-) 525 WP_019458744.1 GNAT family N-acetyltransferase -
  I8T81_RS07930 (I8T81_07930) gigD 1683979..1684428 (-) 450 WP_004701228.1 Lrp/AsnC family transcriptional regulator GigD -
  I8T81_RS07935 (I8T81_07935) kynU 1684575..1685825 (+) 1251 WP_198072537.1 kynureninase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38019.34 Da        Isoelectric Point: 4.7853

>NTDB_id=514745 I8T81_RS07905 WP_198072536.1 1680333..1681385(-) (recA) [Acinetobacter seifertii strain S21]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENKQIAEEIER
NIREQLLTTGTNGAAQVEDDEEEPDLLLES

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=514745 I8T81_RS07905 WP_198072536.1 1680333..1681385(-) (recA) [Acinetobacter seifertii strain S21]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGTCAAATTGAAAAACAATTTGGCAAAAATACGGTTATGCG
TCTCGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATCGCC
CAATGTCAAAAGTCTGGTGGTACATGTGCCTTCATCGATGCCGAGCATGCCCTAGATCCTCAATATGCACGTAAACTTGG
TGTAGATATTGACAACCTACTTGTTTCACAACCTGATAATGGTGAACAAGCACTTGAAATCGCCGATATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCCCTTACACCTAAAGCAGAGATCGAAGGTGAGATGGGTGAT
TCTCACATGGGTCTACAAGCTCGTCTTATGAGCCAAGCGCTTCGTAAAATTACGGGTAACGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACAACGGGTGGTAACGCTC
TTAAGTTCTATGCGTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGACGAAATCGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAAAACAAAATGGCTCCTCCATTTAGAGAAGCTATTTTCCAAATCCTATACGGCAAAGGCAC
TAACCAACTTGGTGAACTTGTAGATTTGGCAGTTCAACAAGATATCGTTCAAAAAGCTGGTGCATGGTATTCATATCAAG
GTAATAAAATTGGCCAAGGTAAGAATAACGTGATTCGTTATTTTGAAGAAAATAAGCAAATCGCTGAAGAGATTGAACGC
AATATTCGAGAGCAATTGCTGACCACAGGTACAAATGGCGCAGCACAAGTTGAAGATGACGAAGAAGAGCCAGATCTATT
ATTAGAATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

98.571

100

0.986
  recA Acinetobacter baylyi ADP1

93.084

99.143

0.923
  recA Pseudomonas stutzeri DSM 10701

73.775

99.143

0.731
  recA Vibrio cholerae strain A1552

73.394

93.429

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.429

0.686
  recA Glaesserella parasuis strain SC1401

68.696

98.571

0.677
  recA Neisseria gonorrhoeae MS11

65.812

100

0.66
  recA Neisseria gonorrhoeae MS11

65.812

100

0.66
  recA Neisseria gonorrhoeae strain FA1090

65.812

100

0.66
  recA Ralstonia pseudosolanacearum GMI1000

70.122

93.714

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.791

98.286

0.617
  recA Helicobacter pylori strain NCTC11637

64.832

93.429

0.606
  recA Helicobacter pylori 26695

64.526

93.429

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

94.571

0.6
  recA Streptococcus mitis NCTC 12261

58.708

100

0.597
  recA Streptococcus pneumoniae R6

59.827

98.857

0.591
  recA Streptococcus pneumoniae D39

59.827

98.857

0.591
  recA Streptococcus pneumoniae TIGR4

59.827

98.857

0.591
  recA Streptococcus pneumoniae Rx1

59.827

98.857

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

93.143

0.583
  recA Streptococcus mitis SK321

59.824

97.429

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

92

0.58
  recA Streptococcus pyogenes NZ131

61.846

92.857

0.574
  recA Streptococcus mutans UA159

61.28

93.714

0.574
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.286

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.255

91.714

0.534