Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6G32_RS18435 Genome accession   NZ_CP065750
Coordinates   3941251..3942297 (+) Length   348 a.a.
NCBI ID   WP_013982302.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain FDAARGOS_875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3936251..3947297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G32_RS18420 (I6G32_18420) mutS 3936410..3938989 (-) 2580 WP_013982299.1 DNA mismatch repair protein MutS -
  I6G32_RS18425 (I6G32_18425) - 3939460..3940572 (+) 1113 WP_013982300.1 acyltransferase family protein -
  I6G32_RS18430 (I6G32_18430) - 3940670..3941167 (+) 498 WP_013982301.1 CinA family protein -
  I6G32_RS18435 (I6G32_18435) recA 3941251..3942297 (+) 1047 WP_013982302.1 recombinase RecA Machinery gene
  I6G32_RS18440 (I6G32_18440) recX 3942303..3942770 (+) 468 WP_013982303.1 recombination regulator RecX -
  I6G32_RS18445 (I6G32_18445) - 3942847..3943938 (-) 1092 WP_013982304.1 LOG family protein -
  I6G32_RS18450 (I6G32_18450) - 3944051..3945460 (-) 1410 WP_014596282.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37166.57 Da        Isoelectric Point: 5.5400

>NTDB_id=513955 I6G32_RS18435 WP_013982302.1 3941251..3942297(+) (recA) [Stutzerimonas stutzeri strain FDAARGOS_875]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKYLEDNPEIGREIEQ
QIRDKLLVVSGGSSKANVVSEDLVDADL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=513955 I6G32_RS18435 WP_013982302.1 3941251..3942297(+) (recA) [Stutzerimonas stutzeri strain FDAARGOS_875]
ATGGACGAGAACAAGAAGCGCGCCCTGGCTGCAGCCCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGTGCAGTGATGCG
CATGGGCGATCATGATCGCCAGGCCATTCCGGCCATTTCTACCGGCTCGCTGGGCCTGGATATCGCGCTTGGAATTGGCG
GCCTGCCCAAGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACCCTGACCCTGTCGGTAATCGCT
GAAGCGCAGAAGATGGGCGCCACCTGTGCCTTCGTCGACGCCGAACACGCGCTGGACCCGGACTACGCTGGCAAGCTGGG
CGTGAACGTCGACGACCTGCTGGTTTCGCAGCCTGATACCGGCGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTGGATGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAT
ACGCACGTCGGCCTGCAGGCCCGTCTGATGTCTCAGGCGCTGCGCAAGATCACGGGCAATATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGATATTCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCGCCGCCCTTCCGTCAGGCTGAGTTCCAGATCCTCTATGGCAAGGGCAT
CTACCGCAATGGCGAGGTCATCGATCTCGGCGTGCAGCAGGGCCTGGTCGAGAAATCTGGCGCCTGGTATGCCTACAAGG
GCAACAAGATCGGTCAGGGCAAGGCCAATGCCGCCAAGTATCTGGAAGACAATCCGGAAATCGGTCGCGAAATCGAACAG
CAGATCCGCGACAAGCTGCTGGTGGTTTCCGGCGGTAGCAGCAAGGCGAACGTGGTCAGCGAAGATCTGGTCGACGCCGA
TCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

94.253

100

0.943
  recA Acinetobacter baylyi ADP1

74.203

99.138

0.736
  recA Acinetobacter baumannii D1279779

76.292

94.54

0.721
  recA Vibrio cholerae strain A1552

74.924

93.966

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

93.966

0.704
  recA Glaesserella parasuis strain SC1401

73.765

93.103

0.687
  recA Ralstonia pseudosolanacearum GMI1000

72.256

94.253

0.681
  recA Neisseria gonorrhoeae MS11

71.605

93.103

0.667
  recA Neisseria gonorrhoeae MS11

71.605

93.103

0.667
  recA Neisseria gonorrhoeae strain FA1090

71.605

93.103

0.667
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

93.966

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

95.977

0.592
  recA Helicobacter pylori strain NCTC11637

62.691

93.966

0.589
  recA Helicobacter pylori 26695

62.08

93.966

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.241

0.575
  recA Streptococcus pneumoniae R6

58.912

95.115

0.56
  recA Streptococcus pneumoniae Rx1

58.912

95.115

0.56
  recA Streptococcus pneumoniae D39

58.912

95.115

0.56
  recA Streptococcus pneumoniae TIGR4

58.912

95.115

0.56
  recA Streptococcus mitis NCTC 12261

58.912

95.115

0.56
  recA Streptococcus mitis SK321

58.61

95.115

0.557
  recA Streptococcus mutans UA159

59.692

93.391

0.557
  recA Streptococcus pyogenes NZ131

58.537

94.253

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.241

0.552
  recA Lactococcus lactis subsp. cremoris KW2

57.585

92.816

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

93.678

0.526