NTDB

Overview

Name	recA	Type	Machinery gene
Locus tag	I6G22_RS12410	Genome accession	NZ_CP065737
Coordinates	2368119..2368958 (+)	Length	279 a.a.
NCBI ID	WP_232238890.1	Uniprot ID	-
Organism	Lactococcus lactis strain FDAARGOS_865
Function	homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2363099..2373184	2368119..2368958	within	0

Gene organization within MGE regions

Location: 2363099..2373184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G22_RS12380 (I6G22_12385)	-	2363099..2363878 (+)	780	WP_032943383.1	DNA-methyltransferase	-
I6G22_RS12385 (I6G22_12390)	-	2363878..2365044 (+)	1167	WP_044009673.1	nucleotide sugar dehydrogenase	-
I6G22_RS12390 (I6G22_12395)	-	2365355..2366131 (+)	777	WP_025016766.1	helix-turn-helix domain-containing protein	-
I6G22_RS12395 (I6G22_12400)	-	2366144..2367593 (+)	1450	Protein_2346	Y-family DNA polymerase	-
I6G22_RS12400 (I6G22_12405)	-	2367590..2367733 (+)	144	WP_155384501.1	hypothetical protein	-
I6G22_RS12405 (I6G22_12410)	-	2367764..2367991 (+)	228	WP_025016765.1	hypothetical protein	-
I6G22_RS12410 (I6G22_12415)	recA	2368119..2368958 (+)	840	WP_232238890.1	recombinase RecA	Machinery gene
I6G22_RS12415 (I6G22_12420)	-	2369244..2370878 (+)	1635	WP_158620876.1	ImmA/IrrE family metallo-endopeptidase	-
I6G22_RS12420 (I6G22_12425)	-	2371263..2371556 (+)	294	WP_025016763.1	hypothetical protein	-
I6G22_RS12425 (I6G22_12430)	-	2371596..2371844 (+)	249	WP_025016762.1	hypothetical protein	-
I6G22_RS12430 (I6G22_12435)	-	2371922..2373184 (+)	1263	WP_025016761.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

Download Length: 279 a.a. Molecular weight: 29957.47 Da Isoelectric Point: 6.0621

                                >NTDB_id=513750 I6G22_RS12410 WP_232238890.1 2368119..2368958(+) (recA) [Lactococcus lactis strain FDAARGOS_865]

MQRLNDKYGDDLIMNESAKKEMRVQALPSGILSLDLAMGIGGYPRGRLIEVFGAESSGKTTVALHAVAQAQKLGGIAAYI

DVENSLDPDYAESIGVNLDDLIFSQPDSGEKAFDALEELVKTGALDLIVIDSVAALTPQAEIDGVNLQAELAKMMSERLK

RIVSLVNKSKTVVLFINQVRSNLSGFLGTGETTPGGKALKFYTSIRIEVKTSEKIKQGELAIGKKTTLTTVKNKVASPFK

KAVVENIWGEGFAPTVDIVTCAAKADVVQQSGKWYSFKG

Nucleotide

Download Length: 840 bp

                                >NTDB_id=513750 I6G22_RS12410 WP_232238890.1 2368119..2368958(+) (recA) [Lactococcus lactis strain FDAARGOS_865]

ATGCAACGCTTAAATGATAAATATGGAGATGATTTAATCATGAACGAGTCAGCCAAGAAAGAAATGCGCGTCCAAGCTCT

CCCGTCTGGTATTTTGTCCCTCGATCTTGCCATGGGAATTGGCGGTTATCCGCGTGGGCGCTTGATTGAAGTGTTTGGGG

CAGAATCCAGTGGCAAGACAACGGTTGCCTTACACGCCGTTGCCCAAGCACAAAAATTGGGTGGCATTGCGGCTTATATT

GATGTCGAAAACTCACTAGACCCTGACTATGCAGAGAGTATTGGAGTGAATCTTGATGATTTGATTTTCTCACAGCCTGA

TTCAGGCGAAAAGGCATTTGACGCTTTAGAAGAACTGGTCAAGACAGGGGCATTAGATCTTATCGTGATTGATTCAGTCG

CCGCATTGACCCCACAAGCTGAGATTGATGGGGTTAATCTACAGGCAGAACTGGCTAAGATGATGTCGGAGCGCTTAAAG

CGGATTGTGTCATTGGTCAATAAGAGCAAAACAGTAGTACTATTTATCAATCAAGTACGGTCAAATTTGTCAGGTTTTCT

TGGTACGGGGGAAACGACACCAGGCGGCAAAGCCCTAAAATTCTATACTTCTATCCGGATTGAAGTAAAAACTTCTGAGA

AAATCAAACAGGGAGAGCTGGCGATTGGGAAGAAAACCACCCTAACGACGGTTAAAAATAAGGTGGCTTCGCCATTTAAA

AAAGCAGTGGTAGAAAATATTTGGGGTGAGGGATTTGCGCCTACGGTCGATATTGTCACTTGTGCGGCAAAGGCTGATGT

TGTCCAACAATCTGGAAAATGGTATAGCTTTAAGGGGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-252)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recA	Streptococcus pneumoniae TIGR4	51.601	100	0.52
recA	Streptococcus pneumoniae Rx1	51.601	100	0.52
recA	Streptococcus pneumoniae D39	51.601	100	0.52
recA	Streptococcus pneumoniae R6	51.601	100	0.52
recA	Streptococcus mitis SK321	51.246	100	0.516
recA	Streptococcus mitis NCTC 12261	51.246	100	0.516
recA	Streptococcus mutans UA159	49.827	100	0.516
recA	Streptococcus pyogenes NZ131	49.481	100	0.513
recA	Bacillus subtilis subsp. subtilis str. 168	50	100	0.509
recA	Latilactobacillus sakei subsp. sakei 23K	48.763	100	0.495
recA	Lactococcus lactis subsp. cremoris KW2	48.929	100	0.491
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.486	100	0.47
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	46.619	100	0.47
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	45.263	100	0.462
recA	Helicobacter pylori strain NCTC11637	44.056	100	0.452
recA	Helicobacter pylori 26695	43.706	100	0.448
recA	Acinetobacter baumannii D1279779	43.972	100	0.444
recA	Ralstonia pseudosolanacearum GMI1000	43.728	100	0.437
recA	Neisseria gonorrhoeae MS11	42.958	100	0.437
recA	Neisseria gonorrhoeae MS11	42.958	100	0.437
recA	Neisseria gonorrhoeae strain FA1090	42.958	100	0.437
recA	Acinetobacter baylyi ADP1	43.262	100	0.437
recA	Vibrio cholerae O1 biovar El Tor strain E7946	42.5	100	0.427
recA	Vibrio cholerae strain A1552	42.5	100	0.427
recA	Pseudomonas stutzeri DSM 10701	40.989	100	0.416
recA	Glaesserella parasuis strain SC1401	40.78	100	0.412

Detailed information NTG0513750