Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6G50_RS10085 Genome accession   NZ_CP065691
Coordinates   2008082..2009233 (+) Length   383 a.a.
NCBI ID   WP_197908743.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003082..2014233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS10075 (I6G50_10070) era 2006077..2006988 (+) 912 WP_081165371.1 GTPase Era -
  I6G50_RS10080 (I6G50_10075) mutM 2007157..2007981 (+) 825 WP_197908742.1 DNA-formamidopyrimidine glycosylase -
  I6G50_RS10085 (I6G50_10080) recA 2008082..2009233 (+) 1152 WP_197908743.1 recombinase RecA Machinery gene
  I6G50_RS10090 (I6G50_10085) - 2009269..2010633 (-) 1365 WP_197908745.1 amino acid permease -
  I6G50_RS10095 (I6G50_10090) - 2010940..2011314 (+) 375 WP_197908747.1 YlbF family regulator -
  I6G50_RS10100 (I6G50_10095) - 2011298..2011654 (+) 357 WP_081165356.1 YlbG family protein -
  I6G50_RS10105 (I6G50_10100) - 2011717..2012235 (-) 519 WP_197908748.1 dithiol-disulfide isomerase -
  I6G50_RS10110 (I6G50_10105) - 2012388..2012984 (-) 597 WP_003136080.1 CYTH domain-containing protein -
  I6G50_RS10115 (I6G50_10110) - 2013304..2013984 (+) 681 WP_003136081.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41088.96 Da        Isoelectric Point: 4.8692

>NTDB_id=513035 I6G50_RS10085 WP_197908743.1 2008082..2009233(+) (recA) [Lactococcus garvieae strain FDAARGOS_893]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAASIGVDVDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFDEIDRKVRQSYGLIEGSEEEDTEVVKDKKTEEKAKVEPSDVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=513035 I6G50_RS10085 WP_197908743.1 2008082..2009233(+) (recA) [Lactococcus garvieae strain FDAARGOS_893]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATTACTAAAAAATATGGAGCAGAACGTGAAAAAGCGTTAAAAGATGC
TCTTGATTTGATTGAAAAAGATTTTGGTAAAGGGTCTTTGATGCGTTTGGGTGAGGCTGCCAGCCAAAAAGTTCAAGTCA
CAAGCTCAGGGAGCTTAGCTCTTGATATTGCCCTTGGAGCAGGTGGCTATCCTAAAGGACGTATCATTGAAATTTATGGT
CCTGAAAGCTCAGGTAAAACAACAGTTGCGCTTCACGCAGTTGCGCAAGTACAAGCCGAGGGTGGTATTGCAGCCTTTAT
CGATGCAGAACACGCTTTGGATCCCGTATATGCTGCTTCGATCGGTGTTGATGTGGATCAGCTTCTCTTATCACAACCAG
ACTATGGTGAACAAGGTCTACAAATCGCAGAAAAATTGATCGAGTCAGGGGCAGTTGACCTCGTTGTTGTAGACTCGGTT
GCAGCTTTGACACCACGTGCTGAAATTGACGGTGAAATCGGTGATTCTACAGTCGGTTTACAAGCGCGTATGATGAGCCA
AGCGATGCGCAAACTTGCTGCTGGTATCAATAAAACAAAGACAACAGCTATCTTCATTAACCAATTGCGTGAAAAAGTTG
GAGTGATGTTTGGTAGTCCAGAAACAACACCTGGTGGACGTGCGCTTAAATTTTACGCATCTGTACGTTTAGATGTTCGT
GGAAGTACTAAAATTGAAGAAGGTTCTGGTGATAACAAAACCGCTATCGGTAAATTGACTAAAATTAAAGTCGTTAAAAA
TAAAGTAGCTCCACCATTTAAAGTAGCTTTGGTAGACATCATGTTTGGTGAAGGTATTTCTAAGACTGGTGAACTTTTAA
CAATTGCGGTTGAAGAAGGCATTGTTAAAAAAGCAGGTGCTTGGTTCTCTTATAATGACGAAAAAATCGGTCAAGGTGCA
GAAAAAGCCAAAGCTTTCCTTAAAGATAATCCAGAAATCTTTGACGAAATCGACCGCAAGGTCCGTCAAAGTTATGGTTT
GATTGAAGGAAGCGAAGAAGAAGATACCGAAGTTGTTAAAGATAAAAAAACAGAGGAAAAAGCCAAAGTTGAACCTTCAG
ATGTAGAAGAAATTGAACTTGAGTTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.08

91.906

0.791
  recA Streptococcus pneumoniae Rx1

77.461

100

0.781
  recA Streptococcus pneumoniae D39

77.461

100

0.781
  recA Streptococcus pneumoniae R6

77.461

100

0.781
  recA Streptococcus pneumoniae TIGR4

77.461

100

0.781
  recA Streptococcus mitis NCTC 12261

77.368

99.217

0.768
  recA Streptococcus mitis SK321

76.44

99.739

0.762
  recA Streptococcus mutans UA159

77.049

95.561

0.736
  recA Streptococcus pyogenes NZ131

80.233

89.817

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

63.099

92.689

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.017

89.556

0.52
  recA Glaesserella parasuis strain SC1401

57.434

89.556

0.514
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

84.334

0.509
  recA Acinetobacter baumannii D1279779

59.877

84.595

0.507
  recA Vibrio cholerae strain A1552

59.877

84.595

0.507
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.877

84.595

0.507
  recA Helicobacter pylori 26695

58.967

85.901

0.507
  recA Helicobacter pylori strain NCTC11637

58.967

85.901

0.507
  recA Acinetobacter baylyi ADP1

59.692

84.856

0.507
  recA Neisseria gonorrhoeae strain FA1090

58.663

85.901

0.504
  recA Neisseria gonorrhoeae MS11

58.663

85.901

0.504
  recA Neisseria gonorrhoeae MS11

58.663

85.901

0.504
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.768

0.491
  recA Pseudomonas stutzeri DSM 10701

54.519

89.556

0.488