Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6G67_RS06860 Genome accession   NZ_CP065666
Coordinates   1362272..1363315 (-) Length   347 a.a.
NCBI ID   WP_004696585.1    Uniprot ID   A0A0A8J985
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1357272..1368315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS06825 (I6G67_06825) fabZ 1357671..1358156 (+) 486 WP_010326983.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6G67_RS06830 (I6G67_06830) lpxA 1358153..1358941 (+) 789 WP_004696577.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  I6G67_RS06835 (I6G67_06835) - 1359001..1359837 (-) 837 WP_004696578.1 YbgF trimerization domain-containing protein -
  I6G67_RS06845 (I6G67_06845) - 1360452..1360805 (+) 354 WP_004696580.1 hypothetical protein -
  I6G67_RS17845 - 1361129..1361449 (+) 321 WP_227555156.1 hypothetical protein -
  I6G67_RS06855 (I6G67_06855) - 1361558..1362163 (-) 606 WP_004696584.1 regulatory protein RecX -
  I6G67_RS06860 (I6G67_06860) recA 1362272..1363315 (-) 1044 WP_004696585.1 recombinase RecA Machinery gene
  I6G67_RS06865 (I6G67_06865) - 1363430..1363873 (-) 444 WP_004696588.1 RNA-binding S4 domain-containing protein -
  I6G67_RS06870 (I6G67_06870) - 1363866..1364540 (-) 675 WP_004696591.1 HAD-IA family hydrolase -
  I6G67_RS06875 (I6G67_06875) - 1365204..1365449 (+) 246 WP_004696593.1 hypothetical protein -
  I6G67_RS06880 (I6G67_06880) - 1365771..1366016 (+) 246 WP_004696594.1 hypothetical protein -
  I6G67_RS06885 (I6G67_06885) - 1366517..1367371 (+) 855 WP_004696595.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  I6G67_RS06890 (I6G67_06890) - 1367426..1368157 (+) 732 WP_004696597.1 histidine phosphatase family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 37588.03 Da        Isoelectric Point: 5.1647

>NTDB_id=512784 I6G67_RS06860 WP_004696585.1 1362272..1363315(-) (recA) [Acinetobacter johnsonii strain FDAARGOS_910]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAETIEK
IIREKLLTTANAAPAEEKEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=512784 I6G67_RS06860 WP_004696585.1 1362272..1363315(-) (recA) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGGATGATAATAAAAGCAAGGCGCTCAATGCTGCGCTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACAGTAATGCG
TCTTGGCGATAACACCGTACAAGCTGTTGAAGCGGTATCAACGGGTTCTTTGACACTTGATATTGCTCTAGGCATTGGCG
GCTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCTGAATCTTCAGGTAAAACAACCATGACTTTACAAGCGATTGCC
GAATGTCAAAAAGCAGGTGGTACATGTGCATTTATTGATGCAGAACACGCTTTAGACCCACAGTATGCGCGTAAACTTGG
CGTAGATATTGACAACCTCTTGGTTTCTCAGCCTGACCATGGTGAACAAGCACTTGAAATTGCAGACATGCTGGTTCGCT
CTGGTGCCATTGACCTCATCGTTGTCGACTCTGTTGCAGCATTGACACCACGTGCAGAAATTGAAGGTGAAATGGGCGAC
TCGCACATGGGCCTCCAAGCACGTTTAATGAGCCAAGCATTACGTAAAATTACAGGTAATGCGAAACGTTCAAACTGTAT
GGTGATTTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGCCCTGAAACCACGACTGGTGGTAATGCGT
TGAAATTCTATGCGTCTGTGCGTTTAGACATTCGACGCGTAGGTCAGGTCAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACCAAAGTAAAAGTTGTCAAAAACAAGATGGCACCTCCATTCCGTGAAGCGCTCTTCCAAATTTTATATGGTAAAGGCGT
TAACCACTTGGGCGAACTTGTAGACTTGGCTGTTCAACAGGAAATCGTACAAAAAGCAGGTGCTTGGTATTCATACCAAG
GCGATAAAATTGGTCAAGGTAAAAACAATGTGATCCGTCATCTCGAAGAAAATCCTCAGTTGGCTGAAACCATTGAGAAA
ATTATTCGAGAAAAGCTACTGACGACTGCAAATGCTGCACCAGCAGAAGAGAAAGAAGAAGAACCAGACTTTTTAGATGC
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0A8J985

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.691

100

0.922

  recA Acinetobacter baumannii D1279779

91.329

99.712

0.911

  recA Pseudomonas stutzeri DSM 10701

73.775

100

0.738

  recA Vibrio cholerae strain A1552

73.414

95.389

0.7

  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.414

95.389

0.7

  recA Glaesserella parasuis strain SC1401

68.605

99.135

0.68

  recA Ralstonia pseudosolanacearum GMI1000

71.341

94.524

0.674

  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637

  recA Neisseria gonorrhoeae MS11

68.21

93.372

0.637

  recA Neisseria gonorrhoeae strain FA1090

68.21

93.372

0.637

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614

  recA Helicobacter pylori strain NCTC11637

62.388

96.542

0.602

  recA Helicobacter pylori 26695

62.09

96.542

0.599

  recA Streptococcus mitis NCTC 12261

58.501

100

0.585

  recA Streptococcus mitis SK321

59.238

98.271

0.582

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.813

0.579

  recA Streptococcus pneumoniae D39

61.656

93.948

0.579

  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579

  recA Streptococcus pneumoniae R6

61.656

93.948

0.579

  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579

  recA Streptococcus pyogenes NZ131

61.28

94.524

0.579

  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576

  recA Streptococcus mutans UA159

61.538

93.66

0.576

  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.507

0.545

  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.084

0.545