Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H5J24_RS01925 Genome accession   NZ_CP065589
Coordinates   415809..416810 (-) Length   333 a.a.
NCBI ID   WP_068944644.1    Uniprot ID   A0A4Q1FR22
Organism   Chryseobacterium capnotolerans isolate DH-B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 410809..421810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J24_RS01915 (H5J24_01840) - 411252..414134 (+) 2883 WP_068944646.1 prolyl oligopeptidase family serine peptidase -
  H5J24_RS01920 (H5J24_01845) - 414290..415750 (+) 1461 WP_068944645.1 hypothetical protein -
  H5J24_RS01925 (H5J24_01850) recA 415809..416810 (-) 1002 WP_068944644.1 recombinase RecA Machinery gene
  H5J24_RS01930 (H5J24_01855) - 417420..418331 (+) 912 WP_232815999.1 hypothetical protein -
  H5J24_RS01935 (H5J24_01860) - 418425..419609 (-) 1185 WP_068944642.1 oxygenase MpaB family protein -
  H5J24_RS01940 (H5J24_01865) - 419691..420488 (-) 798 WP_068944641.1 LuxR C-terminal-related transcriptional regulator -
  H5J24_RS01945 (H5J24_01870) - 420683..421513 (+) 831 WP_232816000.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35851.19 Da        Isoelectric Point: 5.3469

>NTDB_id=512075 H5J24_RS01925 WP_068944644.1 415809..416810(-) (recA) [Chryseobacterium capnotolerans isolate DH-B6]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDESIDNTVEVIPSGSLGLDIALGIGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEESKLGQGRDAVKDVLKDNPELAE
ELENKIKEELKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=512075 H5J24_RS01925 WP_068944644.1 415809..416810(-) (recA) [Chryseobacterium capnotolerans isolate DH-B6]
ATGAGTAACATTGATGATAAGAAAAAAGCACTCGCATTGGTGCTTGACAAGCTAGATAAAACATACGGAAAGGGAACAGT
AATGACTTTAGGTGATGAATCTATAGACAATACAGTAGAGGTTATTCCTTCCGGATCTTTAGGATTAGATATCGCATTAG
GTATAGGAGGATATCCAAAAGGAAGAATCATTGAAATATATGGTCCTGAATCTTCAGGTAAAACAACATTAACCCTTCAT
GCTATTGCTGAAGCTCAAAAAGCAGGTGGTATTGCGGCATTTATTGATGCTGAGCATGCTTTCGACAGAACTTATGCTGC
AAAATTAGGAATCGATTTGGAAAATCTTATCATTTCTCAGCCGGACAATGGTGAGCAGGCATTAGAAATTGCTGATAACC
TGATCCGTTCAGGAGCTATTGACATTGTTGTTATTGACTCTGTTGCAGCACTTACTCCAAAAGCGGAGATTGAAGGTGAA
ATGGGAGATTCTAAAATGGGTCTTCACGCAAGATTAATGTCTCAGGCATTAAGAAAATTAACCGCTACGATTTCAAGAAC
GAAGTGTACTGTAATCTTCATCAACCAATTAAGAGAAAAAATTGGTGTAATGTTCGGAAACCCTGAAACAACTACCGGTG
GTAATGCTCTTAAATTTTACGCTTCTGTAAGAATTGATATCAGAAAAGCAAGTGCGCCAATTAAACAAGGTGACGAAGCG
ATCGGAAGCCGAGTGAAAGTGAAGATTGTGAAAAATAAAGTAGCTCCACCTTTCAAACAAGCAGAATTCGACATTATGTA
CGGTGAAGGAGTTTCTAAAGTTGGAGAAATCCTTGATACAGCAGTTGACATGGGAATTGTGAAAAAAAGCGGTTCTTGGT
TCAGCTACGAAGAGTCTAAATTAGGCCAGGGACGTGATGCTGTAAAAGATGTTTTAAAAGACAATCCTGAACTTGCCGAG
GAATTGGAAAACAAGATCAAAGAAGAGTTGAAAAACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q1FR22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.18

100

0.802
  recA Acinetobacter baylyi ADP1

65.046

98.799

0.643
  recA Acinetobacter baumannii D1279779

65.031

97.898

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

98.198

0.634
  recA Glaesserella parasuis strain SC1401

64.22

98.198

0.631
  recA Helicobacter pylori 26695

63.303

98.198

0.622
  recA Helicobacter pylori strain NCTC11637

63.303

98.198

0.622
  recA Ralstonia pseudosolanacearum GMI1000

65.815

93.994

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

62.577

97.898

0.613
  recA Neisseria gonorrhoeae MS11

62.539

96.997

0.607
  recA Neisseria gonorrhoeae MS11

62.539

96.997

0.607
  recA Neisseria gonorrhoeae strain FA1090

62.539

96.997

0.607
  recA Streptococcus pyogenes NZ131

61.468

98.198

0.604
  recA Pseudomonas stutzeri DSM 10701

61.656

97.898

0.604
  recA Streptococcus mitis NCTC 12261

61.656

97.898

0.604
  recA Streptococcus mitis SK321

61.656

97.898

0.604
  recA Vibrio cholerae strain A1552

60.486

98.799

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.486

98.799

0.598
  recA Streptococcus mutans UA159

60.55

98.198

0.595
  recA Lactococcus lactis subsp. cremoris KW2

60.429

97.898

0.592
  recA Streptococcus pneumoniae Rx1

59.756

98.498

0.589
  recA Streptococcus pneumoniae D39

59.756

98.498

0.589
  recA Streptococcus pneumoniae R6

59.756

98.498

0.589
  recA Streptococcus pneumoniae TIGR4

59.756

98.498

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

59.133

96.997

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.055

97.898

0.559