Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q7C_RS01050 Genome accession   NC_017856
Coordinates   217317..218360 (+) Length   347 a.a.
NCBI ID   WP_014702851.1    Uniprot ID   I1YEQ8
Organism   Methylophaga frappieri     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 212317..223360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C_RS01025 (Q7C_215) crp 212699..213388 (-) 690 WP_050954371.1 cAMP-activated global transcriptional regulator CRP -
  Q7C_RS01030 (Q7C_216) - 213502..213921 (+) 420 WP_014702847.1 OsmC family protein -
  Q7C_RS01035 (Q7C_217) - 213933..214214 (+) 282 WP_041366335.1 YcgL domain-containing protein -
  Q7C_RS01040 (Q7C_218) mutS 214209..216746 (-) 2538 WP_014702849.1 DNA mismatch repair protein MutS -
  Q7C_RS01045 (Q7C_219) - 216764..217258 (+) 495 WP_014702850.1 CinA family protein -
  Q7C_RS01050 (Q7C_220) recA 217317..218360 (+) 1044 WP_014702851.1 recombinase RecA Machinery gene
  Q7C_RS01055 (Q7C_221) recX 218357..218797 (+) 441 WP_041366337.1 recombination regulator RecX -
  Q7C_RS01060 (Q7C_222) alaS 218794..221397 (+) 2604 WP_014702853.1 alanine--tRNA ligase -
  Q7C_RS01065 (Q7C_223) - 221400..222620 (+) 1221 WP_014702854.1 aspartate kinase -
  Q7C_RS01070 (Q7C_224) csrA 222823..223008 (+) 186 WP_014702855.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37182.52 Da        Isoelectric Point: 5.1799

>NTDB_id=51024 Q7C_RS01050 WP_014702851.1 217317..218360(+) (recA) [Methylophaga frappieri]
MDENRKKALGVALGQIEKQFGKGAVMRLGDGSAARDIEAVSTGSIGLDVALGIGGLPRGRVIEIYGPESSGKTTLTLHAI
AEMQKMGGTAAFVDAEHALDPLYAEKLGVNIDDLLVSQPDTGEQALEIADMLVRSGAVDIVVVDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEILGN
ETRVKVVKNKVAPPFKQVEFDILYGEGISREGELIDLGVAANIVEKSGAWYSYDGNRIGQGKDNVRQYLKDNDAIAADIE
SKIRAVMLPKNSKAKPESDLSETESEA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=51024 Q7C_RS01050 WP_014702851.1 217317..218360(+) (recA) [Methylophaga frappieri]
ATGGATGAAAACAGAAAAAAAGCGCTTGGCGTTGCCTTAGGTCAAATTGAGAAACAATTTGGCAAAGGCGCCGTGATGCG
TTTAGGCGATGGAAGCGCCGCCCGTGATATCGAAGCTGTTTCAACCGGCTCAATTGGTCTTGATGTGGCGCTAGGTATTG
GTGGCCTACCGCGCGGACGGGTGATTGAAATTTATGGTCCGGAATCTTCGGGCAAAACCACCTTAACGCTGCATGCCATT
GCCGAAATGCAAAAAATGGGTGGCACAGCGGCTTTTGTCGACGCAGAACATGCACTCGATCCATTGTACGCAGAAAAACT
GGGCGTCAATATTGATGATTTACTGGTTTCACAACCCGACACCGGCGAACAAGCCTTGGAAATCGCCGATATGCTGGTCC
GAAGTGGTGCAGTCGATATTGTTGTTGTTGACTCTGTCGCCGCCCTGACACCAAAAGCAGAAATCGAAGGTGATATGGGC
GACAGTCATATGGGCTTGCAAGCCCGATTGATGTCACAGGCATTGAGAAAGTTAACAGCCAATATTAAACGCTCTAACAC
CCTCGTTATCTTTATCAATCAGATTCGGATGAAAATTGGCGTCATGTTTGGGAACCCTGAAACAACAACGGGAGGTAATG
CCCTAAAATTTTACGCCTCTGTCCGTTTGGACATTCGACGCATTGGCGCCATCAAAAAAGGCGATGAAATTTTAGGTAAT
GAAACGCGCGTCAAGGTGGTGAAAAATAAAGTCGCGCCTCCATTTAAGCAAGTTGAGTTTGATATTCTTTACGGTGAAGG
CATTTCACGCGAAGGCGAGCTCATTGATTTAGGCGTGGCGGCGAATATTGTTGAAAAATCGGGGGCTTGGTATAGCTATG
ACGGCAACCGAATCGGTCAGGGCAAAGATAATGTCCGTCAGTATTTGAAAGATAATGACGCCATCGCAGCGGATATCGAA
AGCAAAATTCGCGCGGTGATGCTGCCTAAAAACAGCAAAGCAAAACCGGAAAGTGATTTATCTGAGACTGAATCAGAGGC
GTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1YEQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.556

97.406

0.726
  recA Acinetobacter baylyi ADP1

72.254

99.712

0.72
  recA Acinetobacter baumannii D1279779

75.305

94.524

0.712
  recA Vibrio cholerae strain A1552

70.69

100

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.69

100

0.709
  recA Glaesserella parasuis strain SC1401

69.602

100

0.706
  recA Neisseria gonorrhoeae MS11

73.006

93.948

0.686
  recA Neisseria gonorrhoeae MS11

73.006

93.948

0.686
  recA Neisseria gonorrhoeae strain FA1090

73.006

93.948

0.686
  recA Ralstonia pseudosolanacearum GMI1000

76.375

89.049

0.68
  recA Bacillus subtilis subsp. subtilis str. 168

69.159

92.507

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.463

94.524

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.463

94.524

0.628
  recA Latilactobacillus sakei subsp. sakei 23K

61.919

99.135

0.614
  recA Helicobacter pylori strain NCTC11637

65.538

93.66

0.614
  recA Streptococcus mutans UA159

60.227

100

0.611
  recA Helicobacter pylori 26695

64.923

93.66

0.608
  recA Streptococcus pyogenes NZ131

62.883

93.948

0.591
  recA Streptococcus mitis SK321

62.654

93.372

0.585
  recA Streptococcus mitis NCTC 12261

62.654

93.372

0.585
  recA Streptococcus pneumoniae Rx1

62.154

93.66

0.582
  recA Streptococcus pneumoniae D39

62.154

93.66

0.582
  recA Streptococcus pneumoniae R6

62.154

93.66

0.582
  recA Streptococcus pneumoniae TIGR4

62.154

93.66

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.697

95.101

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.692

93.66

0.559

Multiple sequence alignment