Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I4484_RS02890 Genome accession   NZ_CP065435
Coordinates   626079..627143 (+) Length   354 a.a.
NCBI ID   WP_197449539.1    Uniprot ID   -
Organism   Halomonas sp. SS10-MC5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 621079..632143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4484_RS02875 (I4484_02875) fdxA 622126..622449 (-) 324 WP_010630102.1 ferredoxin FdxA -
  I4484_RS02880 (I4484_02880) mutS 622611..625199 (-) 2589 WP_197449537.1 DNA mismatch repair protein MutS -
  I4484_RS02885 (I4484_02885) - 625445..625957 (+) 513 WP_197449538.1 CinA family protein -
  I4484_RS02890 (I4484_02890) recA 626079..627143 (+) 1065 WP_197449539.1 recombinase RecA Machinery gene
  I4484_RS02895 (I4484_02895) - 627147..627626 (+) 480 WP_197449540.1 regulatory protein RecX -
  I4484_RS02900 (I4484_02900) alaS 627801..630410 (+) 2610 WP_197449541.1 alanine--tRNA ligase -
  I4484_RS02905 (I4484_02905) - 630511..631761 (+) 1251 WP_111412936.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38013.30 Da        Isoelectric Point: 4.7785

>NTDB_id=509639 I4484_RS02890 WP_197449539.1 626079..627143(+) (recA) [Halomonas sp. SS10-MC5]
MAQDENRSKALNAALSQIERQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQRQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGHIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSVKQGDEVVG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCNLIDKAGAWYSYQGNKIGQGKANAAQFLEDNPAVMEEI
ESQIRGQLLATVAPKEEEAEEPVAADAEREDDLL

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=509639 I4484_RS02890 WP_197449539.1 626079..627143(+) (recA) [Halomonas sp. SS10-MC5]
ATGGCACAGGATGAAAACCGTTCCAAGGCATTGAATGCCGCCCTTTCCCAGATCGAGCGCCAGTTCGGCAAGGGCACCGT
GATGCGCCTGGGCGACGCGCCGCGGGTAGTGATGCCATCGGTGTCCACCGGCTCGCTGGGGCTCGACATCGCGCTCGGCA
TCGGCGGCCTGCCCTACGGTCGCGTGGTGGAGATCTTCGGCCCGGAATCCTCGGGCAAGACCACCCTGACCCTGTCGGTG
ATCGCCCAGGCCCAGCGCCAGGGCAAGACCTGCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGAGCTACGCCGAGAA
GCTCGGCGTCAACCTCGACGACCTGCTGGTGTCGCAGCCCGACACCGGCGAGCAGGCGCTGGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGGGTCGACGTGATCATCATCGACTCGGTGGCGGCGCTGACACCGCGCGCCGAGATCGAGGGCGAGATG
GGCGATTCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTCACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCCCCGAGACCACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCAGCGTGCGCCTCGACATCCGCCGCACCGGCTCGGTGAAGCAGGGCGACGAGGTGGTCGGC
AACGAGACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGCATCTATCACGCCGGCGAGGTGGTCGACCTGGGCGTGCAGTGCAACCTGATCGACAAGGCCGGGGCCTGGTACAGCT
ACCAGGGCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCGGTGATGGAGGAGATC
GAGAGCCAGATCCGCGGCCAGCTGCTGGCCACGGTCGCGCCCAAGGAGGAGGAGGCCGAGGAGCCGGTGGCGGCCGACGC
CGAGCGCGAGGACGACCTGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.592

96.893

0.771
  recA Acinetobacter baylyi ADP1

74.344

96.893

0.72
  recA Acinetobacter baumannii D1279779

74.269

96.61

0.718
  recA Glaesserella parasuis strain SC1401

67.908

98.588

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.086

92.09

0.664
  recA Vibrio cholerae strain A1552

72.086

92.09

0.664
  recA Neisseria gonorrhoeae strain FA1090

70.497

90.96

0.641
  recA Neisseria gonorrhoeae MS11

70.497

90.96

0.641
  recA Neisseria gonorrhoeae MS11

70.497

90.96

0.641
  recA Ralstonia pseudosolanacearum GMI1000

71.656

88.701

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.607

94.915

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

92.09

0.573
  recA Helicobacter pylori 26695

62.27

92.09

0.573
  recA Helicobacter pylori strain NCTC11637

61.656

92.09

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

90.395

0.562
  recA Streptococcus mutans UA159

56.25

99.435

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

58.457

95.198

0.556
  recA Streptococcus mitis SK321

59.509

92.09

0.548
  recA Streptococcus mitis NCTC 12261

59.202

92.09

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.055

92.938

0.54
  recA Streptococcus pyogenes NZ131

58.769

91.808

0.54
  recA Streptococcus pneumoniae Rx1

57.975

92.09

0.534
  recA Streptococcus pneumoniae D39

57.975

92.09

0.534
  recA Streptococcus pneumoniae R6

57.975

92.09

0.534
  recA Streptococcus pneumoniae TIGR4

57.975

92.09

0.534
  recA Lactococcus lactis subsp. cremoris KW2

56.347

91.243

0.514