Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I5V48_RS00390 Genome accession   NZ_CP065430
Coordinates   75048..76199 (+) Length   383 a.a.
NCBI ID   WP_004195473.1    Uniprot ID   A0A0N0DNN1
Organism   Streptococcus suis strain YZDH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 70048..81199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS00375 (I5V48_00375) ruvA 72014..72604 (+) 591 WP_043025669.1 Holliday junction branch migration protein RuvA -
  I5V48_RS00380 (I5V48_00380) - 73209..73778 (+) 570 WP_043025096.1 DNA-3-methyladenine glycosylase I -
  I5V48_RS00385 (I5V48_00385) cinA 73815..74996 (+) 1182 WP_043025095.1 competence/damage-inducible protein A Machinery gene
  I5V48_RS00390 (I5V48_00390) recA 75048..76199 (+) 1152 WP_004195473.1 recombinase RecA Machinery gene
  I5V48_RS00395 (I5V48_00395) spx 76359..76757 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  I5V48_RS00400 (I5V48_00400) - 76864..77130 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  I5V48_RS00405 (I5V48_00405) ruvX 77130..77549 (+) 420 WP_174850213.1 Holliday junction resolvase RuvX -
  I5V48_RS00410 (I5V48_00410) - 77561..77878 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -
  I5V48_RS00415 (I5V48_00415) - 78074..78619 (+) 546 WP_228475292.1 nucleotidyltransferase family protein -
  I5V48_RS00420 (I5V48_00420) comX/sigX 78714..79184 (+) 471 WP_043025097.1 sigma-70 family RNA polymerase sigma factor Regulator
  I5V48_RS00425 (I5V48_00425) rpsJ 79450..79758 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  I5V48_RS00430 (I5V48_00430) rplC 79972..80598 (+) 627 WP_011921686.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40960.71 Da        Isoelectric Point: 4.8974

>NTDB_id=509493 I5V48_RS00390 WP_004195473.1 75048..76199(+) (recA) [Streptococcus suis strain YZDH1]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEGEEAPEVVTEETPVATEEVQDVILDLDGGIELEE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=509493 I5V48_RS00390 WP_004195473.1 75048..76199(+) (recA) [Streptococcus suis strain YZDH1]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCAGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTATGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAAAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCAGAACATGCCTTGGATCCAGCCTATGCAGCAGCGCTTGGTGTCAATATTGATGAGTTACTCTTGTCACAGCCGG
ATTCAGGGGAGCAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATTGATGGCGATATTGGTGATAGTCATGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGCAAACTCGGAGCATCCATCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCCGAAACAACACCTGGTGGTCGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGCGATAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCTCCTCCGTTTAAAGAGGTTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATACAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGATT
GATTGAAGGTGAGGAAGCACCAGAAGTCGTGACAGAGGAAACCCCTGTTGCAACTGAAGAAGTCCAAGATGTTATTTTAG
ACTTGGATGGCGGCATCGAATTAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0DNN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

84.896

100

0.851
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae R6

83.679

100

0.843
  recA Streptococcus pneumoniae Rx1

83.679

100

0.843
  recA Streptococcus pneumoniae D39

83.679

100

0.843
  recA Streptococcus pneumoniae TIGR4

83.679

100

0.843
  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836
  recA Streptococcus mitis SK321

83.508

99.739

0.833
  recA Lactococcus lactis subsp. cremoris KW2

74.504

92.167

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

85.901

0.582
  recA Acinetobacter baumannii D1279779

59.544

91.645

0.546
  recA Neisseria gonorrhoeae MS11

61.934

86.423

0.535
  recA Neisseria gonorrhoeae MS11

61.934

86.423

0.535
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.423

0.535
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

85.901

0.522
  recA Pseudomonas stutzeri DSM 10701

57.349

90.601

0.52
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.856

0.52
  recA Glaesserella parasuis strain SC1401

61.231

84.856

0.52
  recA Acinetobacter baylyi ADP1

61.231

84.856

0.52
  recA Vibrio cholerae strain A1552

61.231

84.856

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

84.334

0.514
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.602

89.295

0.514
  recA Ralstonia pseudosolanacearum GMI1000

60.252

82.768

0.499
  recA Helicobacter pylori strain NCTC11637

57.576

86.162

0.496
  recA Helicobacter pylori 26695

57.576

86.162

0.496