Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I5P99_RS12225 Genome accession   NZ_CP065380
Coordinates   2583096..2584277 (-) Length   393 a.a.
NCBI ID   WP_223384367.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain Fp28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2578096..2589277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5P99_RS12195 - 2578299..2578667 (+) 369 WP_097773256.1 RidA family protein -
  I5P99_RS12200 asnA 2578804..2579817 (+) 1014 WP_223384363.1 aspartate--ammonia ligase -
  I5P99_RS12205 - 2579872..2580534 (-) 663 WP_154277450.1 hypothetical protein -
  I5P99_RS12210 pgsA 2580531..2581121 (-) 591 WP_117535954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I5P99_RS12215 rimO 2581140..2582465 (-) 1326 WP_117505835.1 30S ribosomal protein S12 methylthiotransferase RimO -
  I5P99_RS12220 - 2582580..2583095 (-) 516 WP_223384365.1 regulatory protein RecX -
  I5P99_RS12225 recA 2583096..2584277 (-) 1182 WP_223384367.1 recombinase RecA Machinery gene
  I5P99_RS12230 prmC 2584404..2585255 (-) 852 WP_223384369.1 peptide chain release factor N(5)-glutamine methyltransferase -
  I5P99_RS12235 - 2585249..2586196 (-) 948 WP_223384371.1 DUF1385 domain-containing protein -
  I5P99_RS12240 - 2586278..2587699 (-) 1422 WP_223384372.1 sensor histidine kinase -
  I5P99_RS12245 - 2587781..2588485 (-) 705 WP_005934889.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41689.53 Da        Isoelectric Point: 5.8436

>NTDB_id=509025 I5P99_RS12225 WP_223384367.1 2583096..2584277(-) (recA) [Faecalibacterium prausnitzii strain Fp28]
MAKNQNNNVAPATQKTNPGAKKDALATALAQIEKQFGKGAVMKLGDNAAMQVDAISTGSIGLDLALGVGGVPRGRIIEVY
GPESSGKTTLALHVLAEAQKKGGDVAFIDVEHALDPVYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVDS
VAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCIFINQLREKVGVVYGNPEVTTGGRALKYYSSVRIDI
RRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDLGVKLGIVQKSGAWFNYGDIRLGQGRDN
AKQFLRDNPEIANDIEGQVRANADKLYATRRPGGKAAAAPAEGEPAAPATAKEPVVKAPARSSESELDIMVEE

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=509025 I5P99_RS12225 WP_223384367.1 2583096..2584277(-) (recA) [Faecalibacterium prausnitzii strain Fp28]
ATGGCAAAAAATCAGAACAACAACGTTGCCCCGGCGACCCAGAAGACCAATCCCGGTGCCAAGAAGGATGCGCTGGCCAC
GGCACTGGCCCAGATCGAGAAGCAGTTCGGCAAGGGCGCTGTGATGAAGCTGGGCGACAACGCCGCCATGCAGGTGGATG
CCATCTCGACCGGAAGCATCGGCCTGGATCTGGCACTGGGTGTGGGCGGCGTGCCCCGGGGCCGCATCATTGAGGTGTAC
GGCCCCGAATCCAGTGGTAAGACCACGCTGGCCCTGCATGTTCTGGCCGAAGCCCAGAAGAAGGGCGGCGATGTTGCCTT
CATCGATGTGGAGCACGCGCTGGACCCTGTGTATGCCGAGGCGCTGGGCGTGGACATCAACAACCTGCTGGTCAGCCAGC
CCGATACCGGTGAGCAGGCCATGGAGATCTGCGAGGCGCTGGTGCGCTCCGGTGCCATTGATGCCATCGTTGTGGACTCT
GTTGCCGCCATGGTGCCCCGCGCTGAGATCGAGGGCGAGATGGGCGACAGCCATGTGGGCCTGCAGGCCCGCCTGATGAG
CCAGGCCATGCGCAAGCTGACCAGCGTCATCGGCAAGACCAACACCGTCTGCATCTTCATCAACCAGCTGCGTGAAAAGG
TCGGCGTGGTCTACGGCAACCCCGAGGTCACCACCGGCGGCCGCGCCCTGAAGTATTATTCCTCTGTCCGCATCGATATC
CGCCGCGTGGAGGGCCTGAAGGATTCCTCCGGCCAGTTCATCGGCAACCACACCCGCGCCAAGATCGTCAAGAACAAGGT
GGCTCCTCCGTTCCGTGAGGCTGAGTTCGACATCATGTTCGGCGAGGGCATCTCCAAGATGAGTGAGCTCATCGATCTGG
GTGTCAAGCTGGGCATCGTTCAGAAGAGCGGTGCATGGTTCAACTACGGTGATATCCGCCTGGGTCAGGGCCGCGACAAC
GCCAAGCAGTTCCTGCGCGATAACCCCGAGATCGCCAACGATATCGAGGGTCAGGTGCGCGCCAATGCCGACAAGCTCTA
TGCCACCCGCCGCCCGGGGGGCAAGGCTGCAGCTGCCCCTGCAGAGGGGGAACCGGCAGCTCCCGCCACAGCAAAGGAGC
CGGTGGTCAAGGCTCCCGCCCGCAGCAGCGAGAGTGAGCTGGATATCATGGTGGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

81.934

0.547
  recA Helicobacter pylori strain NCTC11637

66.044

81.679

0.539
  recA Helicobacter pylori 26695

65.732

81.679

0.537
  recA Glaesserella parasuis strain SC1401

61.337

87.532

0.537
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.19

80.407

0.524
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.078

84.987

0.519
  recA Vibrio cholerae strain A1552

63.438

81.425

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.438

81.425

0.517
  recA Acinetobacter baylyi ADP1

58.841

87.786

0.517
  recA Neisseria gonorrhoeae strain FA1090

63.24

81.679

0.517
  recA Pseudomonas stutzeri DSM 10701

63.24

81.679

0.517
  recA Neisseria gonorrhoeae MS11

63.24

81.679

0.517
  recA Neisseria gonorrhoeae MS11

63.24

81.679

0.517
  recA Lactococcus lactis subsp. cremoris KW2

58.261

87.786

0.511
  recA Streptococcus mutans UA159

62.229

82.188

0.511
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

81.679

0.506
  recA Streptococcus mitis NCTC 12261

61.61

82.188

0.506
  recA Ralstonia pseudosolanacearum GMI1000

63.987

79.135

0.506
  recA Streptococcus mitis SK321

61.3

82.188

0.504
  recA Streptococcus pyogenes NZ131

60.991

82.188

0.501
  recA Streptococcus pneumoniae Rx1

60.615

82.697

0.501
  recA Streptococcus pneumoniae D39

60.615

82.697

0.501
  recA Streptococcus pneumoniae R6

60.615

82.697

0.501
  recA Streptococcus pneumoniae TIGR4

60.615

82.697

0.501
  recA Acinetobacter baumannii D1279779

60.938

81.425

0.496
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

82.952

0.481