Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I5P98_RS01905 Genome accession   NZ_CP065379
Coordinates   372657..373838 (+) Length   393 a.a.
NCBI ID   WP_097793110.1    Uniprot ID   A0A2A7B413
Organism   Faecalibacterium prausnitzii strain Fp40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 367657..378838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5P98_RS01885 - 368365..369069 (+) 705 WP_118553499.1 response regulator transcription factor -
  I5P98_RS01890 - 369117..370538 (+) 1422 WP_223382874.1 sensor histidine kinase -
  I5P98_RS01895 - 370627..371574 (+) 948 WP_223382875.1 DUF1385 domain-containing protein -
  I5P98_RS01900 prmC 371568..372425 (+) 858 WP_223382876.1 peptide chain release factor N(5)-glutamine methyltransferase -
  I5P98_RS01905 recA 372657..373838 (+) 1182 WP_097793110.1 recombinase RecA Machinery gene
  I5P98_RS01910 - 373839..374351 (+) 513 WP_223382877.1 regulatory protein RecX -
  I5P98_RS01915 rimO 374451..375776 (+) 1326 WP_097793108.1 30S ribosomal protein S12 methylthiotransferase RimO -
  I5P98_RS01920 pgsA 375797..376387 (+) 591 WP_223382878.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I5P98_RS01925 - 376404..377057 (+) 654 WP_223382879.1 hypothetical protein -
  I5P98_RS01930 - 377140..377814 (-) 675 WP_223382880.1 hypothetical protein -
  I5P98_RS01935 - 377952..378509 (-) 558 WP_097793104.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41805.70 Da        Isoelectric Point: 5.5696

>NTDB_id=509003 I5P98_RS01905 WP_097793110.1 372657..373838(+) (recA) [Faecalibacterium prausnitzii strain Fp40]
MAAKNQNTVVTATQKTEPGAKKDALATALAQIEKQFGKGAVMKLGDNAAMQVEAISTGSLGLDMALGVGGVPRGRIVEVY
GPESSGKTTLALHILAEAQKQGGEVAFIDVEHALDPVYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVDS
VAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCVFINQLREKVGVVYGNPEVTTGGRALKYYSSVRIDI
RRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDLGVKLGIVQKSGAWFNYGDIRLGQGRDN
AKQFLRDNPELANDIEGQIRANADKLYATRRTAKAAAAAPDAGSKAESAPAKEPVVKAPVRSSESELDIMVEE

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=509003 I5P98_RS01905 WP_097793110.1 372657..373838(+) (recA) [Faecalibacterium prausnitzii strain Fp40]
ATGGCAGCAAAGAATCAGAACACGGTCGTCACCGCGACCCAGAAGACCGAGCCGGGTGCCAAGAAGGACGCGCTGGCGAC
CGCGCTGGCCCAGATCGAAAAGCAGTTCGGCAAGGGTGCCGTCATGAAGCTGGGCGACAATGCCGCCATGCAGGTGGAAG
CCATCTCCACCGGCAGCCTGGGTCTGGATATGGCATTGGGCGTGGGCGGTGTGCCGCGCGGCCGCATCGTCGAGGTGTAC
GGCCCGGAATCCAGCGGTAAGACCACGCTGGCCCTGCACATCCTGGCCGAGGCTCAGAAGCAGGGCGGCGAGGTCGCCTT
CATCGACGTCGAGCACGCGCTGGACCCCGTGTATGCCGAGGCACTGGGCGTGGACATCAACAACCTGCTGGTCAGCCAGC
CGGACACCGGTGAGCAGGCCATGGAGATCTGCGAGGCGCTGGTCCGTTCCGGTGCCATCGACGCCATCGTCGTGGACTCG
GTCGCCGCCATGGTCCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGAG
CCAGGCCATGCGCAAACTGACCAGCGTCATTGGCAAGACCAACACGGTCTGCGTCTTCATCAACCAGCTGCGTGAGAAGG
TCGGCGTCGTCTACGGCAACCCCGAAGTCACCACCGGCGGCCGTGCGCTGAAGTATTATTCCTCGGTGCGCATCGACATC
CGCCGTGTGGAGGGCCTGAAGGACTCCTCCGGCCAGTTCATCGGCAACCACACCCGTGCCAAGATCGTGAAGAACAAGGT
GGCCCCTCCGTTCCGTGAGGCCGAGTTCGACATCATGTTCGGCGAGGGCATTTCCAAGATGAGCGAACTCATTGATCTGG
GCGTCAAGCTGGGCATCGTCCAGAAAAGCGGCGCATGGTTCAACTATGGCGATATCCGCCTGGGTCAGGGCCGCGACAAC
GCCAAACAGTTCCTGCGGGACAATCCGGAGCTGGCCAACGACATCGAGGGCCAGATCCGCGCCAATGCCGACAAGCTCTA
TGCCACCCGCCGCACCGCAAAGGCAGCCGCTGCTGCACCGGACGCCGGCAGCAAGGCCGAGTCCGCCCCGGCTAAGGAGC
CGGTGGTCAAGGCTCCCGTCCGCAGCAGCGAGAGCGAACTGGACATCATGGTGGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7B413

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

63.422

86.26

0.547
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

81.934

0.547
  recA Helicobacter pylori strain NCTC11637

66.044

81.679

0.539
  recA Helicobacter pylori 26695

65.732

81.679

0.537
  recA Pseudomonas stutzeri DSM 10701

61.584

86.768

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.357

86.26

0.529
  recA Vibrio cholerae strain A1552

61.357

86.26

0.529
  recA Neisseria gonorrhoeae MS11

63.889

82.443

0.527
  recA Neisseria gonorrhoeae MS11

63.889

82.443

0.527
  recA Neisseria gonorrhoeae strain FA1090

63.889

82.443

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

84.987

0.527
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

81.679

0.517
  recA Latilactobacillus sakei subsp. sakei 23K

62.617

81.679

0.511
  recA Lactococcus lactis subsp. cremoris KW2

58.261

87.786

0.511
  recA Streptococcus mutans UA159

61.92

82.188

0.509
  recA Ralstonia pseudosolanacearum GMI1000

63.987

79.135

0.506
  recA Acinetobacter baylyi ADP1

62.187

81.425

0.506
  recA Streptococcus pyogenes NZ131

60.681

82.188

0.499
  recA Streptococcus mitis NCTC 12261

60.681

82.188

0.499
  recA Streptococcus mitis SK321

60.681

82.188

0.499
  recA Acinetobacter baumannii D1279779

60.938

81.425

0.496
  recA Streptococcus pneumoniae Rx1

59.877

82.443

0.494
  recA Streptococcus pneumoniae D39

59.877

82.443

0.494
  recA Streptococcus pneumoniae R6

59.877

82.443

0.494
  recA Streptococcus pneumoniae TIGR4

59.877

82.443

0.494
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

82.952

0.478