Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DGO_RS14405 Genome accession   NC_017790
Coordinates   3011110..3012180 (+) Length   356 a.a.
NCBI ID   WP_014686240.1    Uniprot ID   H8GV85
Organism   Deinococcus gobiensis I-0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3006110..3017180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGO_RS14390 (DGo_CA2830) allB 3007548..3008915 (+) 1368 WP_043802640.1 allantoinase AllB -
  DGO_RS14395 (DGo_CA2831) - 3009084..3010307 (+) 1224 WP_014686238.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DGO_RS14400 (DGo_CA2832) thpR 3010340..3011113 (+) 774 WP_226991387.1 RNA 2',3'-cyclic phosphodiesterase -
  DGO_RS14405 (DGo_CA2833) recA 3011110..3012180 (+) 1071 WP_014686240.1 recombinase RecA Machinery gene
  DGO_RS14410 (DGo_CA2834) - 3012367..3012942 (-) 576 WP_014686241.1 biotin transporter BioY -
  DGO_RS14415 (DGo_CA2835) - 3012939..3013892 (-) 954 WP_014686242.1 biotin--[acetyl-CoA-carboxylase] ligase -
  DGO_RS14420 (DGo_CA2836) - 3014028..3014426 (+) 399 WP_014686243.1 Fur family transcriptional regulator -
  DGO_RS14425 (DGo_CA2837) - 3014491..3015174 (+) 684 WP_043802645.1 hypothetical protein -
  DGO_RS14430 (DGo_CA2838) - 3015317..3016153 (+) 837 WP_014686245.1 SDR family oxidoreductase -
  DGO_RS14435 (DGo_CA2839) - 3016343..3016567 (+) 225 WP_014686246.1 transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37741.40 Da        Isoelectric Point: 5.6260

>NTDB_id=50897 DGO_RS14405 WP_014686240.1 3011110..3012180(+) (recA) [Deinococcus gobiensis I-0]
MSKDATKEITAPSDAKERMKAIETAMSQIEKAFGKGSIMKLGAESKLDVQTVSTGSLSLDLALGVGGIPKGRVTEIYGPE
SGGKTTLALSIVAQSQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAA
LTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKI
GQPIKVGNDAVANTVKVKTVKNKVAAPFKEVELALVYGKGFDQLSDLVTLAADMDIIKKSGSFYSYGEERIGQGKEKAIA
YISERPEMEQEIRARVLSAIRTGNAPEVPSVPALAE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=50897 DGO_RS14405 WP_014686240.1 3011110..3012180(+) (recA) [Deinococcus gobiensis I-0]
ATGAGCAAAGACGCCACCAAGGAAATCACTGCCCCCAGCGACGCCAAGGAACGCATGAAGGCCATCGAGACGGCCATGAG
CCAGATCGAGAAGGCCTTCGGCAAGGGCAGCATCATGAAGCTCGGCGCCGAGAGCAAGCTCGACGTGCAGACCGTGAGCA
CCGGCAGCCTGAGCCTGGACCTCGCGCTGGGCGTGGGCGGCATCCCCAAGGGCCGCGTCACCGAGATCTACGGCCCCGAG
TCGGGCGGCAAGACCACCCTGGCCCTGAGCATCGTCGCGCAGTCGCAGAAGGCGGGCGGCACCTGCGCCTTCATCGACGC
CGAGCACGCGCTGGACCCCGTGTACGCCCGCGCCCTGGGCGTGAACACCGACGAACTGCTCGTGTCGCAGCCCGACAACG
GCGAGCAGGCGCTCGAAATCATGGAGCTGCTCGTGCGCTCGGGCGCCATCGACGTGGTCGTGGTGGACTCGGTCGCCGCG
CTGACCCCGCGCGCCGAAATCGAGGGCGAGATGGGCGACAGCCTCCCCGGCCTCCAGGCCCGCCTGATGTCGCAGGCCCT
GCGCAAGCTCACCGCCATCCTGTCCAAGACCGGCACCGCCGCCATCTTCATCAACCAGGTGCGCGAGAAGATCGGCGTGA
TGTACGGCAACCCCGAAACCACGACCGGCGGGCGCGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGACGTGCGCAAGATC
GGCCAGCCCATCAAGGTCGGCAACGACGCCGTGGCGAACACCGTGAAGGTCAAGACCGTGAAGAACAAGGTCGCCGCGCC
CTTCAAGGAAGTCGAACTGGCCCTGGTGTACGGCAAGGGCTTCGACCAGCTCAGCGACCTCGTGACGCTGGCGGCCGACA
TGGACATCATCAAGAAGTCGGGGTCCTTCTACAGCTACGGCGAGGAACGCATCGGCCAGGGCAAGGAAAAGGCCATCGCC
TACATCTCCGAGCGCCCCGAGATGGAGCAGGAGATCCGCGCCCGCGTCCTGAGCGCCATCCGCACCGGCAACGCCCCGGA
AGTGCCCAGCGTGCCCGCCCTGGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8GV85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

94.186

96.629

0.91
  recA Glaesserella parasuis strain SC1401

64.22

91.854

0.59
  recA Streptococcus pneumoniae D39

61.493

94.101

0.579
  recA Streptococcus pneumoniae R6

61.493

94.101

0.579
  recA Streptococcus pneumoniae Rx1

61.493

94.101

0.579
  recA Streptococcus pneumoniae TIGR4

61.493

94.101

0.579
  recA Acinetobacter baumannii D1279779

62.997

91.854

0.579
  recA Acinetobacter baylyi ADP1

62.462

91.292

0.57
  recA Streptococcus mitis SK321

62.539

90.73

0.567
  recA Streptococcus mitis NCTC 12261

62.539

90.73

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

60.725

92.978

0.565
  recA Streptococcus mutans UA159

59.581

93.82

0.559
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.856

91.854

0.559
  recA Vibrio cholerae strain A1552

60.856

91.854

0.559
  recA Streptococcus pyogenes NZ131

60.681

90.73

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

62.179

87.64

0.545
  recA Ralstonia pseudosolanacearum GMI1000

62.662

86.517

0.542
  recA Neisseria gonorrhoeae MS11

59.752

90.73

0.542
  recA Neisseria gonorrhoeae strain FA1090

59.752

90.73

0.542
  recA Neisseria gonorrhoeae MS11

59.752

90.73

0.542
  recA Pseudomonas stutzeri DSM 10701

55.652

96.91

0.539
  recA Lactococcus lactis subsp. cremoris KW2

58.589

91.573

0.537
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.786

94.663

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.177

88.764

0.525
  recA Helicobacter pylori strain NCTC11637

55.325

94.944

0.525
  recA Helicobacter pylori 26695

55.325

94.944

0.525

Multiple sequence alignment