Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IT895_RS03440 Genome accession   NZ_CP065230
Coordinates   718715..719782 (+) Length   355 a.a.
NCBI ID   WP_066321310.1    Uniprot ID   -
Organism   Halomonas sp. A40-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 713715..724782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT895_RS03425 (IT895_03420) fdxA 714927..715250 (-) 324 WP_066321307.1 ferredoxin FdxA -
  IT895_RS03430 (IT895_03425) mutS 715410..717980 (-) 2571 WP_199284696.1 DNA mismatch repair protein MutS -
  IT895_RS03435 (IT895_03430) - 718091..718624 (+) 534 WP_085918908.1 CinA family protein -
  IT895_RS03440 (IT895_03435) recA 718715..719782 (+) 1068 WP_066321310.1 recombinase RecA Machinery gene
  IT895_RS03445 (IT895_03440) - 719798..720259 (+) 462 WP_199284697.1 regulatory protein RecX -
  IT895_RS03450 (IT895_03445) alaS 720417..723026 (+) 2610 WP_199284698.1 alanine--tRNA ligase -
  IT895_RS03455 (IT895_03450) - 723100..724350 (+) 1251 WP_085918905.1 aspartate kinase -
  IT895_RS03460 (IT895_03455) csrA 724543..724731 (+) 189 WP_066321318.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38092.39 Da        Isoelectric Point: 5.1593

>NTDB_id=508248 IT895_RS03440 WP_066321310.1 718715..719782(+) (recA) [Halomonas sp. A40-4]
MAQDDNRTKALNAALSQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPYGRVAEIFGPESSGKTTLTLSV
IAQAQKQGKVCAFVDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEITDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDAHVGLQARLMSQALRKISGNIKNANCLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKVGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQQNLVDKAGAWYSYKGKKIGQGKANAAQYLEEHPDVMEEI
ESQIRAQLLAQPEPKKEEAAKKEEAADANAEDDLL

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=508248 IT895_RS03440 WP_066321310.1 718715..719782(+) (recA) [Halomonas sp. A40-4]
ATGGCTCAGGATGATAATCGCACCAAGGCGCTCAACGCTGCGCTCAGCCAGATTGATCGCCAGTTTGGCAAAGGCACGGT
CATGCGGCTGGGCGACGCTCCCCGCGTTGTCATGCCGTCGGTGTCCACCGGCTCGCTGGGTCTGGATATCGCCCTTGGTA
TCGGTGGCCTGCCGTATGGCCGGGTGGCTGAAATTTTCGGCCCGGAGTCCTCGGGTAAGACGACCCTGACCCTGTCGGTG
ATTGCGCAAGCCCAGAAACAGGGCAAGGTCTGCGCATTCGTGGATGCCGAGCATGCGCTGGACCCCAGCTATGCTGAAAA
ACTGGGTGTTAATCTGGACGACCTGCTGGTGTCTCAGCCGGATACCGGCGAACAGGCGCTGGAAATCACCGATATGCTGG
TGCGTTCCGGCGGTGTCGATGTGATCATTATCGACTCGGTGGCGGCGTTGACCCCACGTGCTGAAATTGAAGGCGAAATG
GGCGATGCCCACGTTGGCCTGCAGGCACGCCTGATGTCGCAGGCGCTGCGCAAGATCAGCGGCAACATCAAGAATGCCAA
CTGCCTAGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGTCCCGAAACGACCACTGGCGGTA
ACGCACTGAAGTTTTACTCAAGCGTGCGGCTGGACATCCGGCGCACGGGGTCGGTGAAAGTTGGCGACGAGGTCACCGGT
AACGAAACCCGCGTTAAAGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGTCAGGCCGAATTCCAGATTCTCTACGGCAA
AGGCATATACCACGCCGGCGAAGTCGTCGATCTGGGCGTGCAGCAGAACCTGGTAGACAAAGCCGGTGCCTGGTACAGCT
ACAAGGGTAAAAAGATCGGTCAGGGCAAGGCCAATGCGGCCCAGTACCTGGAAGAGCACCCTGACGTCATGGAAGAGATC
GAAAGCCAGATTCGCGCCCAGCTGCTTGCCCAGCCCGAGCCGAAGAAAGAAGAGGCTGCCAAGAAGGAAGAAGCGGCTGA
CGCGAACGCCGAAGACGATCTGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.191

97.465

0.772
  recA Acinetobacter baylyi ADP1

72.093

96.901

0.699
  recA Acinetobacter baumannii D1279779

73.926

91.831

0.679
  recA Glaesserella parasuis strain SC1401

66.286

98.592

0.654
  recA Vibrio cholerae strain A1552

69.091

92.958

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.091

92.958

0.642
  recA Neisseria gonorrhoeae MS11

69.969

90.986

0.637
  recA Neisseria gonorrhoeae MS11

69.969

90.986

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.969

90.986

0.637
  recA Ralstonia pseudosolanacearum GMI1000

70.159

88.732

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

91.831

0.577
  recA Helicobacter pylori 26695

60.778

94.085

0.572
  recA Helicobacter pylori strain NCTC11637

60.18

94.085

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.347

94.93

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

61.875

90.141

0.558
  recA Streptococcus pneumoniae Rx1

55.493

100

0.555
  recA Streptococcus pneumoniae D39

55.493

100

0.555
  recA Streptococcus pneumoniae R6

55.493

100

0.555
  recA Streptococcus pneumoniae TIGR4

55.493

100

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

60.123

91.831

0.552
  recA Streptococcus mitis NCTC 12261

56.16

98.31

0.552
  recA Streptococcus mitis SK321

56.395

96.901

0.546
  recA Streptococcus mutans UA159

54.494

100

0.546
  recA Streptococcus pyogenes NZ131

57.927

92.394

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.055

91.831

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

91.549

0.521