Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I3X02_RS08735 Genome accession   NZ_CP065213
Coordinates   1739993..1741030 (+) Length   345 a.a.
NCBI ID   WP_140450634.1    Uniprot ID   A0AAX6N2P6
Organism   Priestia megaterium strain HGS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1734993..1746030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X02_RS08720 - 1735138..1736181 (-) 1044 WP_209368838.1 PocR ligand-binding domain-containing protein -
  I3X02_RS08725 - 1736486..1737619 (+) 1134 WP_209368840.1 glycerol dehydrogenase -
  I3X02_RS08730 dhaK 1737621..1739384 (+) 1764 WP_116740960.1 dihydroxyacetone kinase subunit DhaK -
  I3X02_RS08735 recA 1739993..1741030 (+) 1038 WP_140450634.1 recombinase RecA Machinery gene
  I3X02_RS08740 - 1741831..1742259 (+) 429 Protein_1639 hypothetical protein -
  I3X02_RS08745 - 1742446..1742769 (+) 324 WP_245229135.1 hypothetical protein -
  I3X02_RS08750 - 1742747..1743133 (+) 387 WP_245229136.1 TetR-like C-terminal domain-containing protein -
  I3X02_RS08755 - 1743509..1744318 (+) 810 WP_014460624.1 DUF4397 domain-containing protein -
  I3X02_RS08760 - 1744287..1744928 (+) 642 WP_014460623.1 class F sortase -
  I3X02_RS08765 - 1745525..1745824 (-) 300 WP_209368842.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37516.52 Da        Isoelectric Point: 4.9930

>NTDB_id=508140 I3X02_RS08735 WP_140450634.1 1739993..1741030(+) (recA) [Priestia megaterium strain HGS7]
MNDKQAALDMALKQIEKQFGTGSIIKMGEGTHAKVEASSSGSLALDIALGINGYPKGRIMEVYGPESSGKTTVSLHAIAE
VQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT
RIKVVKNKMAPPFRIAEVDIMYGEGISREGEILDIGSEVDIVQKSGSWFSYNGERLGQGRENAKIFLKENPEIREEIRKN
IIDFKYGNTANDNDIDNDSDSENES

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=508140 I3X02_RS08735 WP_140450634.1 1739993..1741030(+) (recA) [Priestia megaterium strain HGS7]
ATGAATGATAAACAAGCAGCACTAGATATGGCTCTAAAACAAATTGAAAAACAATTCGGTACAGGGTCAATTATTAAAAT
GGGAGAAGGCACACATGCAAAAGTTGAGGCATCTAGCTCAGGCTCATTAGCTTTAGATATAGCTCTTGGAATTAATGGTT
ACCCCAAAGGAAGAATCATGGAAGTGTACGGACCCGAAAGCTCAGGTAAAACAACCGTTTCCTTGCATGCAATTGCAGAA
GTACAAAAAAATGGAGGTCGAGCTGCCTTTATTGATGCTGAACACGCACTTGATCCAGTTTACGCAAGAAAACTAGGTGT
AGATATTGATGAGTTACTGTTGTCTCAACCAGATACTGGTGAACAAGCACTTGAAATTGCTGAAGCATTAGTTAGAAGTG
GCGCTGTTGATATTATTGTTGTTGACTCAGTAGCAGCATTAGTTCCGCAAAAAGAAATTGAAGGAGAAATGGGAGATTCT
CACGTAGGTCTACAAGCTCGTTTGATGTCTCAAGCTCTTCGTAAACTATCTGGAGCAATTAATAAGTCTAAAACCATTGC
TATCTTCATCAACCAAATCAGGGAGAAGGTAGGCGTTATGTTTGGAAATCCGGAAACAACGCCAGGTGGAAGAGCACTAA
AATTTTATTCTTCCGTTCGTCTTGAAGTTCGCCGCGCTGAACAACTTAAACTAGGAAATGACATAGTTGGTAACAAAACA
AGAATTAAAGTAGTCAAAAACAAGATGGCACCTCCTTTCCGCATTGCTGAAGTAGATATTATGTATGGAGAAGGTATCTC
AAGAGAAGGAGAAATCTTAGATATTGGTTCTGAAGTAGATATTGTTCAAAAGTCTGGATCTTGGTTTTCGTATAATGGGG
AACGTTTAGGACAGGGAAGAGAAAACGCTAAGATTTTCTTAAAAGAAAACCCTGAAATCAGAGAAGAAATTAGAAAAAAC
ATTATTGATTTTAAATATGGTAATACTGCCAACGATAATGATATTGATAACGATAGCGATAGTGAAAACGAAAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.333

93.913

0.783
  recA Latilactobacillus sakei subsp. sakei 23K

73.125

92.754

0.678
  recA Streptococcus pneumoniae R6

65.517

100

0.661
  recA Streptococcus pneumoniae Rx1

65.517

100

0.661
  recA Streptococcus pneumoniae D39

65.517

100

0.661
  recA Streptococcus pneumoniae TIGR4

65.517

100

0.661
  recA Streptococcus mutans UA159

65.23

100

0.658
  recA Streptococcus pyogenes NZ131

68.21

93.913

0.641
  recA Streptococcus mitis NCTC 12261

68.421

93.623

0.641
  recA Streptococcus mitis SK321

68.111

93.623

0.638
  recA Neisseria gonorrhoeae strain FA1090

66.044

93.043

0.614
  recA Neisseria gonorrhoeae MS11

66.044

93.043

0.614
  recA Neisseria gonorrhoeae MS11

66.044

93.043

0.614
  recA Lactococcus lactis subsp. cremoris KW2

65.635

93.623

0.614
  recA Acinetobacter baylyi ADP1

61.224

99.42

0.609
  recA Glaesserella parasuis strain SC1401

60.756

99.71

0.606
  recA Acinetobacter baumannii D1279779

65.204

92.464

0.603
  recA Vibrio cholerae strain A1552

64.89

92.464

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.89

92.464

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

93.043

0.591
  recA Pseudomonas stutzeri DSM 10701

63.323

92.464

0.586
  recA Helicobacter pylori strain NCTC11637

63.125

92.754

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.798

88.986

0.586
  recA Helicobacter pylori 26695

62.813

92.754

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.043

94.493

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.696

93.333

0.548