Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F126LOC_RS05020 Genome accession   NZ_CP065031
Coordinates   1132343..1133416 (+) Length   357 a.a.
NCBI ID   WP_119872314.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain F126     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1117277..1131730 1132343..1133416 flank 613


Gene organization within MGE regions


Location: 1117277..1133416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F126LOC_RS04925 (F126LOC_004925) - 1117277..1117603 (+) 327 WP_052903876.1 hypothetical protein -
  F126LOC_RS04930 (F126LOC_004930) - 1117719..1117778 (-) 60 WP_230857193.1 hypothetical protein -
  F126LOC_RS04935 (F126LOC_004935) - 1117949..1120042 (+) 2094 Protein_964 RHS repeat-associated core domain-containing protein -
  F126LOC_RS04940 (F126LOC_004940) - 1120014..1120595 (+) 582 WP_014916337.1 hypothetical protein -
  F126LOC_RS04945 (F126LOC_004945) - 1120770..1121300 (+) 531 Protein_966 RHS repeat-associated core domain-containing protein -
  F126LOC_RS22295 - 1121507..1121734 (+) 228 WP_230857164.1 hypothetical protein -
  F126LOC_RS04955 (F126LOC_004955) - 1121731..1122060 (+) 330 WP_119872312.1 hypothetical protein -
  F126LOC_RS04960 (F126LOC_004960) - 1122124..1122246 (-) 123 WP_230857194.1 SymE family type I addiction module toxin -
  F126LOC_RS04965 (F126LOC_004965) pvcA 1122544..1123503 (+) 960 WP_371928267.1 L-tyrosine isonitrile synthase -
  F126LOC_RS04970 (F126LOC_004970) - 1123583..1123732 (+) 150 WP_165572846.1 hypothetical protein -
  F126LOC_RS04975 (F126LOC_004975) - 1123839..1124261 (+) 423 WP_039511952.1 bacteriocin immunity protein -
  F126LOC_RS04980 (F126LOC_004980) grxB 1124358..1124993 (-) 636 WP_039504900.1 glutaredoxin 2 -
  F126LOC_RS04985 (F126LOC_004985) - 1125209..1126090 (+) 882 WP_039556117.1 LysR family transcriptional regulator -
  F126LOC_RS04990 (F126LOC_004990) - 1126206..1127423 (+) 1218 WP_119872313.1 MFS transporter -
  F126LOC_RS04995 (F126LOC_004995) - 1127668..1129266 (-) 1599 WP_104213519.1 sensor domain-containing diguanylate cyclase -
  F126LOC_RS05000 (F126LOC_005000) - 1129447..1130121 (-) 675 WP_010307203.1 MarC family NAAT transporter -
  F126LOC_RS05005 (F126LOC_005005) - 1130204..1130692 (-) 489 WP_014916324.1 SRPBCC family protein -
  F126LOC_RS05010 (F126LOC_005010) - 1131174..1131509 (+) 336 WP_010285350.1 hypothetical protein -
  F126LOC_RS05015 (F126LOC_005015) pncC 1131743..1132237 (+) 495 WP_039523519.1 nicotinamide-nucleotide amidase -
  F126LOC_RS05020 (F126LOC_005020) recA 1132343..1133416 (+) 1074 WP_119872314.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38260.73 Da        Isoelectric Point: 5.0716

>NTDB_id=505951 F126LOC_RS05020 WP_119872314.1 1132343..1133416(+) (recA) [Pectobacterium brasiliense strain F126]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTIAAEL
DKKLREMLLHKGNELAPATAGNSHDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=505951 F126LOC_RS05020 WP_119872314.1 1132343..1133416(+) (recA) [Pectobacterium brasiliense strain F126]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACTATTTCTACAGGCTCTTTGTCCCTGGATATCGCTTTGGGCG
CCGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACAACGCTGACCTTACAGGTT
ATTGCTGCCGCCCAGCGCGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCGCTGGACCCGATTTATGCGAAAAA
GCTTGGTGTAGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAAGCGTTGGAGATCTGTGATGCATTAA
CGCGCTCTGGCGCTGTTGACGTTATCATCGTCGACTCCGTTGCGGCACTGACGCCAAAAGCAGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACCACTACCGGTGGTA
ACGCTCTGAAATTTTATGCTTCTGTTCGCCTGGATATTCGTCGTACTGGTGCAATCAAGGAAGGCGAAGAGGTTGTCGGC
AGCGAAACCCGTGTGAAAGTCGTGAAGAATAAAGTGGCAGCGCCGTTCAAACAGGCTGAATTCCAAATTCTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTCGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGTCAGGGTAAAGCAAATGCCTGTAATTTCCTGAAAGAGAACCCGACTATTGCTGCGGAATTG
GATAAGAAATTGCGTGAAATGCTGTTGCATAAAGGCAATGAACTGGCACCTGCCACCGCTGGAAATAGCCATGACGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.099

99.44

0.826
  recA Vibrio cholerae strain A1552

83.099

99.44

0.826
  recA Pseudomonas stutzeri DSM 10701

73.121

96.919

0.709
  recA Acinetobacter baumannii D1279779

70.809

96.919

0.686
  recA Glaesserella parasuis strain SC1401

69.516

98.319

0.683
  recA Acinetobacter baylyi ADP1

70.52

96.919

0.683
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.317

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus pneumoniae Rx1

60

99.44

0.597
  recA Streptococcus pneumoniae R6

60

99.44

0.597
  recA Streptococcus pneumoniae D39

60

99.44

0.597
  recA Streptococcus pneumoniae TIGR4

60

99.44

0.597
  recA Streptococcus mitis NCTC 12261

61.493

93.838

0.577
  recA Helicobacter pylori strain NCTC11637

62.691

91.597

0.574
  recA Helicobacter pylori 26695

62.385

91.597

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.597

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Streptococcus mitis SK321

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

62.154

91.036

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535