Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DKB71_RS06465 Genome accession   NZ_CP064949
Coordinates   1432674..1433732 (+) Length   352 a.a.
NCBI ID   WP_008060630.1    Uniprot ID   J3IHS3
Organism   Pseudomonas sp. PLMAX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427674..1438732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKB71_RS06445 (DKB71_06420) - 1430069..1430803 (+) 735 WP_408601061.1 helix-turn-helix transcriptional regulator -
  DKB71_RS06450 (DKB71_06425) - 1430926..1431276 (+) 351 WP_408599895.1 phage holin family protein -
  DKB71_RS06455 (DKB71_06430) - 1431418..1431984 (+) 567 WP_408599896.1 glycoside hydrolase family 19 protein -
  DKB71_RS06460 (DKB71_06435) - 1432090..1432590 (+) 501 WP_274073309.1 CinA family protein -
  DKB71_RS06465 (DKB71_06440) recA 1432674..1433732 (+) 1059 WP_008060630.1 recombinase RecA Machinery gene
  DKB71_RS06470 (DKB71_06445) recX 1433741..1434208 (+) 468 WP_274073310.1 recombination regulator RecX -
  DKB71_RS06475 (DKB71_06450) - 1434252..1435370 (-) 1119 WP_323628652.1 TIGR00730 family Rossman fold protein -
  DKB71_RS06480 (DKB71_06455) - 1435854..1436048 (+) 195 WP_180203236.1 hypothetical protein -
  DKB71_RS06485 (DKB71_06460) - 1436050..1436472 (-) 423 WP_274073312.1 PA3611 family quorum-sensing-regulated virulence factor -
  DKB71_RS06490 (DKB71_06465) - 1436656..1437399 (+) 744 WP_408599898.1 tRNA-uridine aminocarboxypropyltransferase -
  DKB71_RS06495 (DKB71_06470) erdR 1437619..1438269 (+) 651 WP_034149864.1 response regulator transcription factor ErdR -
  DKB71_RS06500 (DKB71_06475) - 1438346..1438708 (+) 363 WP_034149863.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37379.81 Da        Isoelectric Point: 5.2957

>NTDB_id=505756 DKB71_RS06465 WP_008060630.1 1432674..1433732(+) (recA) [Pseudomonas sp. PLMAX]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKYLADNPDIAATLEK
QLRDKLLSPASVADAKASAVKETEDDLADADI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=505756 DKB71_RS06465 WP_008060630.1 1432674..1433732(+) (recA) [Pseudomonas sp. PLMAX]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATCTCCACTGGCTCTCTGGGTCTGGACATCGCTTTGGGCATTGGCG
GTCTGCCAAAAGGCCGCATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCCCAGAAAGCCGGCGCGACCTGCGCCTTCGTCGATGCCGAGCACGCCCTCGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCAGCGCTGGTGCCAAAAGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGATATCCGCCGCACGGGTGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAG
ACCCGCGTCAAGGTTGTAAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTTGAAAAGTCCGGTGCCTGGTATGCCTATAACG
GCACCAAGATCGGCCAGGGTAAAGCCAACTCGGCCAAGTACCTGGCGGATAACCCGGATATTGCCGCAACGCTCGAGAAA
CAACTGCGTGACAAGCTGCTGTCGCCGGCTTCGGTAGCGGACGCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGATCT
GGCTGACGCTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3IHS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.784

100

0.878
  recA Acinetobacter baylyi ADP1

73.41

98.295

0.722
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

94.318

0.707
  recA Vibrio cholerae strain A1552

75

94.318

0.707
  recA Acinetobacter baumannii D1279779

73.716

94.034

0.693
  recA Glaesserella parasuis strain SC1401

70.93

97.727

0.693
  recA Ralstonia pseudosolanacearum GMI1000

69.552

95.17

0.662
  recA Neisseria gonorrhoeae MS11

71.296

92.045

0.656
  recA Neisseria gonorrhoeae MS11

71.296

92.045

0.656
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.045

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

92.898

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

94.034

0.58
  recA Helicobacter pylori strain NCTC11637

58.551

98.011

0.574
  recA Streptococcus mutans UA159

56.461

100

0.571
  recA Helicobacter pylori 26695

57.971

98.011

0.568
  recA Streptococcus pyogenes NZ131

56.695

99.716

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

60.748

91.193

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

56.686

97.727

0.554
  recA Streptococcus pneumoniae Rx1

58.41

92.898

0.543
  recA Streptococcus pneumoniae D39

58.41

92.898

0.543
  recA Streptococcus pneumoniae R6

58.41

92.898

0.543
  recA Streptococcus pneumoniae TIGR4

58.41

92.898

0.543
  recA Streptococcus mitis NCTC 12261

58.642

92.045

0.54
  recA Streptococcus mitis SK321

58.642

92.045

0.54
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

92.614

0.52