Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I1H34_RS12275 Genome accession   NZ_CP064923
Coordinates   2567182..2568258 (-) Length   358 a.a.
NCBI ID   WP_212665870.1    Uniprot ID   -
Organism   Acaryochloris marina S15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2562182..2573258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1H34_RS12260 (I1H34_12255) - 2563024..2563830 (-) 807 WP_212665868.1 carboxylesterase -
  I1H34_RS12265 (I1H34_12260) - 2563864..2564676 (-) 813 WP_212665869.1 DUF2797 domain-containing protein -
  I1H34_RS12270 (I1H34_12265) - 2565035..2566516 (-) 1482 WP_249370059.1 peroxidase family protein -
  I1H34_RS12275 (I1H34_12270) recA 2567182..2568258 (-) 1077 WP_212665870.1 recombinase RecA Machinery gene
  I1H34_RS12280 (I1H34_12275) - 2568376..2568579 (+) 204 WP_212665871.1 hypothetical protein -
  I1H34_RS12285 (I1H34_12280) - 2568590..2570461 (-) 1872 WP_212665872.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38528.83 Da        Isoelectric Point: 4.7720

>NTDB_id=505658 I1H34_RS12275 WP_212665870.1 2567182..2568258(-) (recA) [Acaryochloris marina S15]
MSAKNDMTEKQKALDLVMKNVEKTFGKGAIMRLGDATRMQVETISSGALTLDLALGGGLPRGRVIEIYGPESSGKTTVAL
HAISQIQKTGGVAAFVDAEHALDPVYAAALGVDVSELLVSQPDSGEMALEIVDQLVRSSAVDLVVIDSVAALTPRAEIEG
DMGDSHMGLQARLMSQALRKITSNIAKSGSTVIFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTDM
YGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTMGCLVDMAEEKDIIVRKGAWYSYDGSNIGQGRENTIQYFLDNPEFAQ
DVEQQVRQKLDLSGEEASADSVTTYEIEEADSTGSDIA

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=505658 I1H34_RS12275 WP_212665870.1 2567182..2568258(-) (recA) [Acaryochloris marina S15]
ATGAGCGCTAAAAATGACATGACTGAGAAGCAAAAAGCCCTCGACTTGGTGATGAAAAACGTTGAAAAGACGTTTGGCAA
AGGGGCGATCATGCGACTGGGAGATGCCACTCGTATGCAGGTCGAGACCATCTCGAGTGGGGCATTAACCCTGGACCTCG
CTTTAGGGGGTGGGCTTCCTAGAGGACGTGTCATTGAAATATATGGACCTGAAAGTTCGGGAAAAACAACGGTAGCCCTC
CATGCGATCTCTCAGATCCAAAAGACTGGAGGTGTCGCGGCTTTTGTCGATGCAGAACATGCTCTTGATCCAGTTTATGC
AGCAGCCTTGGGTGTCGATGTATCAGAGCTGCTTGTGAGTCAGCCTGATTCTGGGGAGATGGCTTTAGAAATTGTGGATC
AGCTAGTTCGTTCTAGTGCGGTTGATCTGGTGGTGATTGACTCTGTTGCTGCTCTCACTCCTAGAGCTGAAATCGAGGGA
GATATGGGTGATTCCCATATGGGCTTACAGGCTCGGTTGATGAGTCAAGCCCTGCGTAAGATTACAAGCAACATTGCCAA
GTCAGGCAGCACCGTCATCTTCCTCAACCAACTTCGTCAGAAGATTGGGGTCACCTATGGTAACCCTGAGGTGACCACGG
GAGGTAACGCCCTCAAGTTCTATGCATCTGTTCGCTTGGATATTCGTCGGATTCAAACTTTGAAAAAAGGGACTGACATG
TATGGCATCCGAGCAAAGGTCAAGGTAGCAAAGAACAAGGTTGCTCCTCCCTTTCGGATTGCAGAGTTTGACATCCTATT
TGGTCAAGGGATTTCAACAATGGGTTGCCTTGTGGATATGGCGGAAGAGAAGGATATCATTGTCCGTAAAGGAGCTTGGT
ATAGCTATGACGGTAGCAATATAGGCCAGGGGCGGGAGAATACCATTCAATATTTCCTAGATAATCCAGAGTTTGCTCAA
GATGTAGAACAACAGGTGCGTCAAAAGCTTGATCTTAGTGGGGAAGAAGCATCAGCCGATTCGGTTACAACTTATGAGAT
AGAAGAAGCTGATTCAACGGGAAGTGACATAGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.804

91.061

0.581
  recA Acinetobacter baylyi ADP1

63.665

89.944

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

63.158

90.223

0.57
  recA Streptococcus mitis SK321

57.627

98.883

0.57
  recA Streptococcus mutans UA159

58.382

96.648

0.564
  recA Streptococcus mitis NCTC 12261

60.18

93.296

0.561
  recA Streptococcus pneumoniae D39

59.821

93.855

0.561
  recA Streptococcus pneumoniae TIGR4

59.821

93.855

0.561
  recA Streptococcus pneumoniae R6

59.821

93.855

0.561
  recA Streptococcus pneumoniae Rx1

59.821

93.855

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.524

93.855

0.559
  recA Neisseria gonorrhoeae MS11

62.305

89.665

0.559
  recA Neisseria gonorrhoeae strain FA1090

62.305

89.665

0.559
  recA Neisseria gonorrhoeae MS11

62.305

89.665

0.559
  recA Pseudomonas stutzeri DSM 10701

59.581

93.296

0.556
  recA Glaesserella parasuis strain SC1401

61.61

90.223

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

60.55

91.341

0.553
  recA Streptococcus pyogenes NZ131

60.55

91.341

0.553
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.939

91.341

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

91.62

0.542
  recA Helicobacter pylori strain NCTC11637

59.568

90.503

0.539
  recA Helicobacter pylori 26695

59.568

90.503

0.539
  recA Ralstonia pseudosolanacearum GMI1000

61.465

87.709

0.539
  recA Vibrio cholerae strain A1552

59.317

89.944

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.317

89.944

0.534
  recA Lactococcus lactis subsp. cremoris KW2

55.864

90.503

0.506