Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I1H34_RS09350 Genome accession   NZ_CP064923
Coordinates   1894699..1895757 (+) Length   352 a.a.
NCBI ID   WP_212665369.1    Uniprot ID   -
Organism   Acaryochloris marina S15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889699..1900757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1H34_RS09340 (I1H34_09340) - 1893845..1894276 (-) 432 WP_249369948.1 hypothetical protein -
  I1H34_RS09345 (I1H34_09345) - 1894378..1894581 (-) 204 WP_212665368.1 hypothetical protein -
  I1H34_RS09350 (I1H34_09350) recA 1894699..1895757 (+) 1059 WP_212665369.1 recombinase RecA Machinery gene
  I1H34_RS09355 (I1H34_09355) - 1895833..1896207 (+) 375 WP_212665370.1 VOC family protein -
  I1H34_RS09360 (I1H34_09360) - 1896443..1897219 (+) 777 WP_212665371.1 VOC family protein -
  I1H34_RS09365 (I1H34_09365) - 1897248..1899473 (+) 2226 WP_212665372.1 ATP-dependent RecD-like DNA helicase -
  I1H34_RS09370 (I1H34_09370) - 1899598..1899984 (+) 387 WP_212665373.1 VOC family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37935.09 Da        Isoelectric Point: 4.7828

>NTDB_id=505656 I1H34_RS09350 WP_212665369.1 1894699..1895757(+) (recA) [Acaryochloris marina S15]
MATHTDASEKQKALDLVMKNVERTFGKGAIMRLGDATRMQIETISSGALTLDLALGGGLPRGRVIEIYGPESSGKTTVAL
HAIAQIQKNGGVAAFVDAEHALDPVYAAALGVDVSELLVSQPDSGEMALEIVDQLVRSSAVDLVVIDSVAALTPRAEIEG
DMGDSHMGLQARLMSQALRKITSNISKSGSTVIFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTDM
FGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTIGCLVDMAEETDVIVRKGAWYSYDGNNIGQGRENTIQYFTDNPEFSE
DVERQVRQKLELGAEVSANSITAVDTEEEEEA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=505656 I1H34_RS09350 WP_212665369.1 1894699..1895757(+) (recA) [Acaryochloris marina S15]
ATGGCCACCCATACTGACGCTTCGGAAAAGCAAAAAGCCCTGGACTTGGTGATGAAAAATGTGGAACGCACCTTTGGCAA
AGGGGCGATTATGCGTCTTGGGGATGCCACTCGGATGCAGATTGAAACCATCTCCTCAGGGGCTTTAACCCTAGATCTAG
CCTTGGGTGGTGGACTGCCAAGAGGCCGGGTGATCGAGATATACGGCCCTGAGAGTTCTGGAAAAACTACCGTAGCGTTA
CATGCGATCGCACAGATCCAAAAAAACGGTGGAGTAGCCGCCTTCGTCGATGCCGAACATGCCCTTGATCCAGTCTATGC
CGCTGCCTTAGGGGTAGATGTTTCTGAATTACTCGTTAGCCAGCCTGACTCTGGAGAGATGGCTCTAGAAATTGTCGATC
AGCTGGTTCGCTCCAGTGCCGTGGATCTCGTTGTTATCGATTCCGTCGCCGCCCTGACGCCTCGCGCTGAAATTGAAGGC
GATATGGGCGACTCCCACATGGGTCTGCAAGCTCGACTGATGAGTCAAGCCCTGCGCAAAATCACTAGCAATATTTCTAA
GTCCGGCAGTACCGTTATCTTTTTGAATCAGCTGCGCCAAAAAATTGGCGTTACCTACGGTAATCCTGAAGTCACCACAG
GCGGTAACGCCCTCAAATTCTACGCTTCCGTTCGTCTCGATATTCGTCGCATTCAAACCCTCAAGAAAGGCACAGATATG
TTTGGCATTCGGGCCAAAGTGAAAGTCGCCAAGAACAAAGTTGCTCCTCCGTTTCGGATTGCTGAGTTTGACATTCTGTT
CGGCCAGGGTATTTCCACTATTGGCTGCCTCGTTGATATGGCAGAAGAAACGGATGTGATTGTCCGCAAAGGAGCTTGGT
ATAGCTATGACGGCAACAACATTGGCCAGGGCCGAGAAAATACGATTCAGTACTTTACCGATAACCCCGAATTTTCTGAA
GATGTCGAGCGCCAAGTTCGCCAAAAGTTGGAATTGGGGGCTGAAGTATCCGCCAACTCGATTACAGCTGTGGATACAGA
GGAAGAAGAAGAGGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

62.099

97.443

0.605
  recA Acinetobacter baylyi ADP1

61.808

97.443

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

59.884

97.727

0.585
  recA Neisseria gonorrhoeae strain FA1090

59.078

98.58

0.582
  recA Neisseria gonorrhoeae MS11

59.078

98.58

0.582
  recA Neisseria gonorrhoeae MS11

59.078

98.58

0.582
  recA Streptococcus pyogenes NZ131

58.621

98.864

0.58
  recA Streptococcus pneumoniae Rx1

57.507

100

0.577
  recA Streptococcus pneumoniae D39

57.507

100

0.577
  recA Streptococcus pneumoniae R6

57.507

100

0.577
  recA Streptococcus pneumoniae TIGR4

57.507

100

0.577
  recA Glaesserella parasuis strain SC1401

57.67

100

0.577
  recA Streptococcus mitis SK321

57.224

100

0.574
  recA Streptococcus mitis NCTC 12261

57.224

100

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.524

95.455

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.017

97.443

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

60.736

92.614

0.562
  recA Streptococcus mutans UA159

60.308

92.33

0.557
  recA Pseudomonas stutzeri DSM 10701

60.559

91.477

0.554
  recA Helicobacter pylori strain NCTC11637

59.568

92.045

0.548
  recA Helicobacter pylori 26695

59.568

92.045

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.612

95.17

0.548
  recA Ralstonia pseudosolanacearum GMI1000

61.736

88.352

0.545
  recA Vibrio cholerae strain A1552

58.696

91.477

0.537
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.696

91.477

0.537
  recA Lactococcus lactis subsp. cremoris KW2

54.545

93.75

0.511