NTDB

Overview

Name	recA	Type	Machinery gene
Locus tag	I1H34_RS08670	Genome accession	NZ_CP064923
Coordinates	1748367..1749422 (-)	Length	351 a.a.
NCBI ID	WP_212665249.1	Uniprot ID	-
Organism	Acaryochloris marina S15
Function	homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1743131..1755017	1748367..1749422	within	0

Gene organization within MGE regions

Location: 1743131..1755017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I1H34_RS08650 (I1H34_08650)	-	1743131..1744417 (+)	1287	WP_212665245.1	serine/threonine-protein kinase	-
I1H34_RS08655 (I1H34_08655)	-	1744412..1745932 (-)	1521	WP_212665246.1	SUMF1/EgtB/PvdO family nonheme iron enzyme	-
I1H34_RS08660 (I1H34_08660)	-	1746091..1747302 (-)	1212	WP_212665247.1	M48 family peptidase	-
I1H34_RS08665 (I1H34_08665)	-	1747512..1748318 (+)	807	WP_212665248.1	RNA polymerase sigma factor RpoD/SigA	-
I1H34_RS08670 (I1H34_08670)	recA	1748367..1749422 (-)	1056	WP_212665249.1	recombinase RecA	Machinery gene
I1H34_RS08675 (I1H34_08675)	-	1749481..1749729 (+)	249	WP_235107878.1	hypothetical protein	-
I1H34_RS08680 (I1H34_08680)	-	1749732..1750382 (+)	651	WP_212665250.1	SOS response-associated peptidase	-
I1H34_RS08685 (I1H34_08685)	dinB	1750399..1751466 (+)	1068	WP_212665251.1	DNA polymerase IV	-
I1H34_RS08690 (I1H34_08690)	-	1751512..1751895 (+)	384	WP_212665252.1	VOC family protein	-
I1H34_RS08695 (I1H34_08695)	-	1752099..1752761 (+)	663	WP_212665253.1	pentapeptide repeat-containing protein	-
I1H34_RS32735	-	1752912..1753046 (-)	135	WP_283250057.1	hypothetical protein	-
I1H34_RS08700 (I1H34_08700)	-	1753197..1753928 (-)	732	WP_212665254.1	hypothetical protein	-
I1H34_RS08705 (I1H34_08705)	-	1753882..1754577 (-)	696	WP_212663775.1	IS630 family transposase	-
I1H34_RS08710 (I1H34_08710)	-	1754574..1755017 (-)	444	WP_212665255.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

Download Length: 351 a.a. Molecular weight: 37556.83 Da Isoelectric Point: 4.8255

                                >NTDB_id=505655 I1H34_RS08670 WP_212665249.1 1748367..1749422(-) (recA) [Acaryochloris marina S15]

MAAITDSAEKQKALDLVLKNVERTFGKGSIMRLGDATRMQIETISSGALTLDLALGGGLPRGRVIEIYGPESSGKTTVAL

HAIAQIQKNGGVAAFVDAEHALDPVYAAALGVDVSELLVSQPDSGEMALEIVDQLVRSSAVDLVVIDSVAALTPRAEIEG

DMGDSHMGLQARLMSQALRKITSNICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTDM

YGIRAKVKVAKNKVAPPFHIAEFDILFGQGISTLGCLVDMAEETDIIVRKGAWYSFDGSNIGQGRDNTIQYFADNPEFAE

SVEQQVRQRLELGAEVSANAITAVEVEEEAA

Nucleotide

Download Length: 1056 bp

                                >NTDB_id=505655 I1H34_RS08670 WP_212665249.1 1748367..1749422(-) (recA) [Acaryochloris marina S15]

ATGGCCGCCATCACTGATTCAGCCGAAAAGCAAAAAGCCCTGGACTTGGTTTTGAAAAATGTGGAGCGCACCTTTGGTAA

AGGGTCGATTATGCGCTTAGGTGATGCCACTCGGATGCAGATTGAAACCATCTCTAGTGGTGCCCTAACCTTAGATCTTG

CCTTAGGCGGTGGCCTGCCCCGAGGCCGGGTGATCGAAATCTATGGCCCTGAAAGTTCAGGCAAAACCACCGTAGCGCTA

CATGCGATCGCACAAATCCAAAAGAACGGTGGAGTCGCCGCCTTCGTTGATGCCGAACATGCCCTTGATCCCGTGTATGC

CGCTGCCTTAGGGGTAGATGTCTCGGAATTGCTCGTCAGTCAGCCCGACTCTGGAGAAATGGCCCTAGAAATTGTCGATC

AGCTCGTGCGCTCCAGTGCCGTCGATCTCGTCGTCATCGATTCTGTCGCTGCTCTGACACCTCGTGCTGAAATTGAAGGG

GATATGGGAGACTCTCACATGGGTTTACAAGCCCGGCTGATGAGTCAGGCCCTGCGCAAAATCACCAGCAATATTTGCAA

ATCCGGCAGCACCGTCATCTTCCTCAATCAGCTCCGTCAAAAAATCGGCGTTACCTACGGAAGTCCCGAAGTCACCACAG

GCGGGAATGCCCTCAAATTCTATGCTTCCGTCCGCCTGGATATCCGTCGGATTCAAACCCTGAAAAAAGGCACCGATATG

TACGGCATCCGCGCCAAGGTCAAAGTAGCGAAGAATAAAGTCGCGCCCCCCTTCCACATTGCCGAGTTTGACATCCTATT

CGGTCAGGGGATTTCCACGTTGGGGTGCTTAGTAGATATGGCAGAAGAAACCGATATCATCGTTCGCAAGGGAGCCTGGT

ATAGCTTCGACGGCAGTAATATTGGTCAAGGCCGAGATAATACCATCCAATATTTTGCCGATAATCCTGAGTTTGCCGAA

AGCGTGGAACAACAGGTGCGTCAACGATTAGAGTTGGGAGCTGAAGTCTCTGCCAATGCCATTACGGCAGTAGAGGTAGA

GGAAGAAGCCGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recA	Acinetobacter baumannii D1279779	62.757	97.151	0.61
recA	Ralstonia pseudosolanacearum GMI1000	60.465	98.006	0.593
recA	Acinetobacter baylyi ADP1	63.665	91.738	0.584
recA	Neisseria gonorrhoeae MS11	62.539	92.023	0.576
recA	Neisseria gonorrhoeae MS11	62.539	92.023	0.576
recA	Neisseria gonorrhoeae strain FA1090	62.539	92.023	0.576
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.909	94.017	0.573
recA	Streptococcus pyogenes NZ131	57.971	98.291	0.57
recA	Streptococcus pneumoniae D39	59.347	96.011	0.57
recA	Streptococcus pneumoniae Rx1	59.347	96.011	0.57
recA	Streptococcus pneumoniae R6	59.347	96.011	0.57
recA	Streptococcus pneumoniae TIGR4	59.347	96.011	0.57
recA	Latilactobacillus sakei subsp. sakei 23K	62.187	91.168	0.567
recA	Streptococcus mitis NCTC 12261	60	94.017	0.564
recA	Streptococcus mitis SK321	60	94.017	0.564
recA	Glaesserella parasuis strain SC1401	61.3	92.023	0.564
recA	Bacillus subtilis subsp. subtilis str. 168	60.123	92.877	0.558
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.735	94.587	0.556
recA	Pseudomonas stutzeri DSM 10701	60.559	91.738	0.556
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	58.434	94.587	0.553
recA	Streptococcus mutans UA159	59.692	92.593	0.553
recA	Helicobacter pylori 26695	58.485	94.017	0.55
recA	Helicobacter pylori strain NCTC11637	58.485	94.017	0.55
recA	Vibrio cholerae strain A1552	59.006	91.738	0.541
recA	Vibrio cholerae O1 biovar El Tor strain E7946	59.006	91.738	0.541
recA	Lactococcus lactis subsp. cremoris KW2	56	92.593	0.519

Detailed information NTG0505655