Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I1H34_RS02025 Genome accession   NZ_CP064923
Coordinates   279686..280750 (+) Length   354 a.a.
NCBI ID   WP_212664113.1    Uniprot ID   -
Organism   Acaryochloris marina S15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 274686..285750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1H34_RS02000 (I1H34_01995) - 275053..275571 (+) 519 WP_235107004.1 hypothetical protein -
  I1H34_RS02005 (I1H34_02000) - 275576..276217 (-) 642 WP_212664109.1 hypothetical protein -
  I1H34_RS02010 (I1H34_02005) - 276311..276775 (-) 465 WP_212664110.1 SRPBCC family protein -
  I1H34_RS02015 (I1H34_02010) - 277038..278333 (+) 1296 WP_212664111.1 alkaline phosphatase PhoX -
  I1H34_RS02020 (I1H34_02015) - 278680..279564 (+) 885 WP_212664112.1 class I SAM-dependent methyltransferase -
  I1H34_RS02025 (I1H34_02020) recA 279686..280750 (+) 1065 WP_212664113.1 recombinase RecA Machinery gene
  I1H34_RS02030 (I1H34_02025) - 280794..282347 (-) 1554 WP_212664114.1 alkaline phosphatase -
  I1H34_RS02035 (I1H34_02030) - 282447..282689 (-) 243 WP_212664115.1 hypothetical protein -
  I1H34_RS02040 (I1H34_02035) - 282939..283298 (+) 360 WP_212664116.1 hypothetical protein -
  I1H34_RS02045 (I1H34_02040) - 283472..284464 (+) 993 WP_212664117.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37900.20 Da        Isoelectric Point: 6.2971

>NTDB_id=505651 I1H34_RS02025 WP_212664113.1 279686..280750(+) (recA) [Acaryochloris marina S15]
MATDNPTNSEKDKALGVVLNQIERTFGKGSIMRLGDAAQMKVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTLA
LHAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTENLLVAQPDTGESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIE
GDMGDSHMGLQARLMSQALRKITGNIGRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTE
EFGIRAKVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETEILIRKGAWYSYNGENIGQGRDNTVRYMQDNPEFT
ESLTQQVRAKLDTGAEVSANTVASTKKGKKAKSE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=505651 I1H34_RS02025 WP_212664113.1 279686..280750(+) (recA) [Acaryochloris marina S15]
ATGGCCACTGATAATCCCACTAACTCTGAGAAAGACAAAGCCCTAGGCGTTGTGCTGAATCAAATCGAGCGCACCTTTGG
TAAGGGATCGATCATGCGCCTGGGAGATGCCGCCCAGATGAAAGTGGAGACGATTTCTAGTGGTGCCTTAACCCTTGATT
TAGCTTTAGGCGGCGGCCTGCCCAAAGGCCGGGTGATTGAGATTTATGGCCCTGAAAGTTCCGGTAAAACGACCTTGGCT
TTGCATGCGATCGCAGAAGTGCAGCGATCCGGCGGTATTGCCGCGTTCGTCGATGCTGAGCATGCCCTTGATCCCACCTA
TGCCTCAGCTCTTGGGGTAGATACAGAGAACTTACTCGTCGCCCAACCTGATACTGGAGAATCTGCTTTAGAAATTGTCG
ATCAGCTGGTTCGCTCTACAGCAGTGGATATTGTCGTCATTGACTCTGTAGCGGCCCTAGTTCCCCGAGCTGAAATTGAG
GGGGATATGGGCGATTCCCACATGGGACTGCAGGCCCGCCTGATGAGCCAGGCCCTACGAAAAATTACCGGCAACATTGG
TCGTACTGGTTGTACAGTGGTATTTCTCAACCAGCTTCGCCAAAAAATTGGTGTCACCTATGGCAACCCTGAAGTCACCA
CGGGGGGTAATGCCCTTAAGTTCTATGCTTCCGTACGTCTAGATATTCGCCGCATCCAGACCTTGAAAAAAGGAACAGAA
GAGTTTGGGATTCGAGCCAAGGTCAAAGTGGTTAAAAATAAGGTGGCTCCTCCTTTTCGGATTGGAGAGTTTGACATTAT
TTTTGGTCAAGGCATTTCTACCCTCGGTTGCCTATTAGATATGGCTGAAGAAACTGAGATCCTGATTCGCAAAGGGGCTT
GGTATAGCTATAACGGCGAAAATATTGGCCAAGGTCGAGACAATACCGTTCGTTATATGCAAGATAATCCCGAGTTCACA
GAATCTCTAACTCAGCAGGTGAGAGCCAAGCTAGATACGGGAGCGGAAGTCTCGGCTAATACCGTCGCTTCCACGAAAAA
AGGAAAAAAAGCGAAATCCGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

62.997

92.373

0.582
  recA Acinetobacter baylyi ADP1

62.614

92.938

0.582
  recA Pseudomonas stutzeri DSM 10701

60.651

95.48

0.579
  recA Glaesserella parasuis strain SC1401

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

58.092

97.74

0.568
  recA Streptococcus pneumoniae D39

58.092

97.74

0.568
  recA Streptococcus pneumoniae Rx1

58.092

97.74

0.568
  recA Streptococcus pneumoniae TIGR4

58.092

97.74

0.568
  recA Streptococcus mitis NCTC 12261

57.143

98.87

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

93.503

0.565
  recA Neisseria gonorrhoeae strain FA1090

61.728

91.525

0.565
  recA Neisseria gonorrhoeae MS11

61.728

91.525

0.565
  recA Neisseria gonorrhoeae MS11

61.728

91.525

0.565
  recA Ralstonia pseudosolanacearum GMI1000

63.987

87.853

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

90.678

0.554
  recA Streptococcus mitis SK321

59.574

92.938

0.554
  recA Vibrio cholerae strain A1552

60

91.808

0.551
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60

91.808

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

60.125

90.678

0.545
  recA Lactococcus lactis subsp. cremoris KW2

56.268

96.893

0.545
  recA Streptococcus mutans UA159

58.716

92.373

0.542
  recA Streptococcus pyogenes NZ131

58.716

92.373

0.542
  recA Helicobacter pylori 26695

57.831

93.785

0.542
  recA Helicobacter pylori strain NCTC11637

57.831

93.785

0.542
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.282

92.09

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.325

93.785

0.528