Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IV493_RS03320 Genome accession   NZ_CP064872
Coordinates   696088..697158 (+) Length   356 a.a.
NCBI ID   WP_013358828.1    Uniprot ID   A0AAX1DNM4
Organism   Pantoea sp. SM3640     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 691088..702158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IV493_RS03290 (IV493_03290) narI 691203..691880 (+) 678 WP_013358834.1 respiratory nitrate reductase subunit gamma -
  IV493_RS03295 (IV493_03295) mltB 692031..693113 (+) 1083 WP_033733598.1 lytic murein transglycosylase B -
  IV493_RS03300 (IV493_03300) - 693194..693529 (+) 336 WP_013358832.1 zinc ribbon domain-containing protein YjdM -
  IV493_RS03305 (IV493_03305) - 693563..694450 (-) 888 WP_195857727.1 dihydrodipicolinate synthase family protein -
  IV493_RS03310 (IV493_03310) tam 694616..695392 (+) 777 WP_095707694.1 trans-aconitate 2-methyltransferase -
  IV493_RS03315 (IV493_03315) pncC 695498..695992 (+) 495 WP_095706759.1 nicotinamide-nucleotide amidase -
  IV493_RS03320 (IV493_03320) recA 696088..697158 (+) 1071 WP_013358828.1 recombinase RecA Machinery gene
  IV493_RS03325 (IV493_03325) - 697280..697798 (+) 519 WP_013358827.1 regulatory protein RecX -
  IV493_RS03330 (IV493_03330) alaS 697932..700559 (+) 2628 WP_095706760.1 alanine--tRNA ligase -
  IV493_RS03335 (IV493_03335) csrA 700810..700995 (+) 186 WP_008927091.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38026.52 Da        Isoelectric Point: 5.0655

>NTDB_id=505503 IV493_RS03320 WP_013358828.1 696088..697158(+) (recA) [Pantoea sp. SM3640]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKSNAGNFLKENAAVANEI
DLKLREMLLNGADEKLAAADKSAEKEDAASEANEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=505503 IV493_RS03320 WP_013358828.1 696088..697158(+) (recA) [Pantoea sp. SM3640]
ATGGCGATTGATGAAAACAAACAGAAGGCTTTAGCTGCCGCGCTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACCATCTCTACCGGTTCGCTCTCGCTGGACATCGCATTAGGCG
CAGGCGGTCTGCCAATGGGCCGTATCGTTGAGATCTACGGACCAGAGTCTTCCGGTAAAACCACGCTGACCCTGCAGGTT
ATCGCATCTGCACAGCGTAAAGGCAAAACCTGTGCCTTTATCGATGCTGAGCATGCGCTTGATCCGGTTTACGCCAAGAA
ACTGGGCGTAGATATTGAAAACCTGCTCTGTTCTCAGCCCGACACCGGTGAGCAGGCGCTGGAAATCTGTGATGCCCTGG
CGCGCTCTGGTGCCGTTGATGTCATCATCGTTGACTCCGTTGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCACATATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAACTGGCCGGTAACCTTAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCGGAAACCACGACCGGTGGTA
ACGCGCTGAAGTTCTATGCGTCTGTCCGTCTTGATATCCGCCGTATCGGTGCCATCAAAGAGGGCGATAACGTGGTGGGC
AGTGAGACCCGCGTTAAGGTAGTGAAAAACAAAATCGCTGCGCCATTTAAACAGGCTGAATTCCAGATTATGTACGGCGA
AGGTATCAATACCTTTGGTGAGCTGGTCGATCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCT
ACAATGGCGACAAGATTGGTCAGGGTAAATCGAATGCCGGCAACTTCCTGAAAGAGAATGCTGCTGTGGCAAACGAAATT
GATCTGAAGTTACGTGAGATGTTGCTCAACGGCGCGGATGAGAAACTCGCAGCAGCAGATAAGTCTGCTGAGAAAGAAGA
CGCGGCAAGTGAAGCGAACGAAGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.791

99.438

0.803
  recA Vibrio cholerae strain A1552

80.791

99.438

0.803
  recA Acinetobacter baylyi ADP1

70.435

96.91

0.683
  recA Acinetobacter baumannii D1279779

72.455

93.82

0.68
  recA Pseudomonas stutzeri DSM 10701

73.7

91.854

0.677
  recA Glaesserella parasuis strain SC1401

67.236

98.596

0.663
  recA Neisseria gonorrhoeae strain FA1090

68.072

93.258

0.635
  recA Neisseria gonorrhoeae MS11

68.072

93.258

0.635
  recA Neisseria gonorrhoeae MS11

68.072

93.258

0.635
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.36

0.618
  recA Helicobacter pylori strain NCTC11637

62.315

94.663

0.59
  recA Helicobacter pylori 26695

62.018

94.663

0.587
  recA Streptococcus mitis SK321

58.146

100

0.581
  recA Streptococcus mitis NCTC 12261

57.865

100

0.579
  recA Streptococcus pneumoniae Rx1

58.405

98.596

0.576
  recA Streptococcus pneumoniae R6

58.405

98.596

0.576
  recA Streptococcus pneumoniae TIGR4

58.405

98.596

0.576
  recA Streptococcus pneumoniae D39

58.405

98.596

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.169

0.57
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.73

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.292

0.562
  recA Streptococcus pyogenes NZ131

61.538

91.292

0.562
  recA Streptococcus mutans UA159

61.538

91.292

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.382

89.607

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.258

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.937

89.045

0.534