Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HCW_RS02960 Genome accession   NC_017737
Coordinates   606016..607059 (+) Length   347 a.a.
NCBI ID   WP_014660740.1    Uniprot ID   I0ELP9
Organism   Helicobacter cetorum MIT 00-7128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 601016..612059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCW_RS02930 (HCW_02905) - 601665..602171 (+) 507 WP_014660734.1 DUF5675 family protein -
  HCW_RS02935 (HCW_02910) - 602140..602379 (+) 240 WP_014660735.1 hypothetical protein -
  HCW_RS02940 (HCW_02915) - 603201..603572 (-) 372 Protein_584 SDR family NAD(P)-dependent oxidoreductase -
  HCW_RS02945 (HCW_02920) - 603725..604258 (+) 534 WP_014660737.1 TIGR00645 family protein -
  HCW_RS02950 (HCW_02925) - 604285..605058 (+) 774 WP_014660738.1 hypothetical protein -
  HCW_RS02955 (HCW_02930) - 605055..605918 (-) 864 WP_014660739.1 menaquinone biosynthesis family protein -
  HCW_RS02960 (HCW_02935) recA 606016..607059 (+) 1044 WP_014660740.1 recombinase RecA Machinery gene
  HCW_RS02965 (HCW_02940) eno 607100..608380 (+) 1281 WP_014660741.1 phosphopyruvate hydratase -
  HCW_RS02970 (HCW_02945) - 608373..608648 (+) 276 WP_014660742.1 hypothetical protein -
  HCW_RS02975 (HCW_02950) - 608667..609266 (+) 600 WP_014660743.1 AMIN domain-containing protein -
  HCW_RS02980 (HCW_02955) - 609263..609763 (+) 501 WP_014660744.1 shikimate kinase -
  HCW_RS02985 (HCW_02960) - 609782..610753 (+) 972 WP_014660745.1 PDC sensor domain-containing protein -
  HCW_RS02990 (HCW_02965) - 610878..611786 (+) 909 WP_014660746.1 outer membrane beta-barrel protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37620.50 Da        Isoelectric Point: 5.9513

>NTDB_id=50471 HCW_RS02960 WP_014660740.1 606016..607059(+) (recA) [Helicobacter cetorum MIT 00-7128]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGIPKGRIIEVYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDIENLLVSQPDTGEQALEILETITRSGAIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
IILKIKESIGTTEEIMPLPDEPLDEMA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=50471 HCW_RS02960 WP_014660740.1 606016..607059(+) (recA) [Helicobacter cetorum MIT 00-7128]
ATGGCGATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATTAAACAAATTGATAAGGTTTTTGGTAAGGGCGCATT
GGTGCGTCTTGGGGATAAGCAAGTAGAAAAGATTGATGCTATTTCTACCGGCTCATTAGGATTAGATTTAGCTTTAGGGA
TTGGGGGAATTCCAAAGGGTAGAATTATTGAAGTGTATGGGCCAGAATCAAGCGGAAAGACTACTTTGAGCTTACATATC
ATTGCAGAATGCCAAAAAAATGGGGGCGTGTGTGCGTTTATTGACGCTGAGCATGCCCTAGATGTGCATTATGCGAAGAG
ACTTGGCGTAGATATTGAAAATTTGCTAGTCTCTCAACCAGATACAGGCGAGCAAGCCCTAGAAATTTTAGAGACTATCA
CTAGAAGTGGGGCGATTGATTTAGTGGTAGTGGATTCTGTAGCTGCACTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGAGACCAGCATGTGGGCTTACAAGCAAGGCTTATGAGTCATGCATTAAGAAAAATCACCGGCGTGTTACACAAAATGAA
TACCACACTAATTTTTATCAATCAAATTAGAATGAAAATTGGCATGATGGGTTATGGAAGCCCAGAGACTACAACAGGGG
GGAATGCCTTAAAATTTTATGCGAGTGTGAGAATTGATATCAGAAGAATTGCCGCTTTAAAACAAAACGAACAGCATATT
GGTAATAGAGCGAAAGCCAAAGTGGTAAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATTATGTTTGG
GGAAGGGATTTCTAAAGAAGGCGAAATTATTGATTATGGCGTGAAACTAGATATTGTGGATAAGAGTGGGGCATGGCTAA
GCTATCAAGATAAAAAGCTAGGGCAGGGTAGAGAAAACGCTAAGGCTTTATTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCATTCTTAAGATTAAAGAGAGTATTGGCACTACTGAAGAGATTATGCCCTTACCTGATGAGCCCCTAGATGAAATGGC
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0ELP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

97.399

99.712

0.971
  recA Helicobacter pylori 26695

96.821

99.712

0.965
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.744

94.524

0.735
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

93.372

0.622
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.846

93.66

0.617
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Acinetobacter baumannii D1279779

64.545

95.101

0.614
  recA Acinetobacter baylyi ADP1

64.134

94.813

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.554

95.677

0.608
  recA Ralstonia pseudosolanacearum GMI1000

61.538

97.406

0.599
  recA Pseudomonas stutzeri DSM 10701

62.121

95.101

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.261

95.965

0.588
  recA Vibrio cholerae strain A1552

61.261

95.965

0.588
  recA Streptococcus pyogenes NZ131

55.966

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Glaesserella parasuis strain SC1401

59.451

94.524

0.562
  recA Streptococcus pneumoniae R6

58.359

94.813

0.553
  recA Streptococcus pneumoniae Rx1

58.359

94.813

0.553
  recA Streptococcus pneumoniae D39

58.359

94.813

0.553
  recA Streptococcus pneumoniae TIGR4

58.359

94.813

0.553
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.751

94.813

0.548
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment