Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IR208_RS06620 Genome accession   NZ_CP064767
Coordinates   1417028..1418095 (+) Length   355 a.a.
NCBI ID   WP_014098502.1    Uniprot ID   A0A0C5CPF9
Organism   Heyndrickxia coagulans strain BC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1412028..1423095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR208_RS06595 (IR208_06595) - 1412558..1412818 (+) 261 WP_013859159.1 DUF3243 domain-containing protein -
  IR208_RS06600 (IR208_06600) - 1413016..1413807 (+) 792 WP_014098506.1 DUF3388 domain-containing protein -
  IR208_RS06605 (IR208_06605) - 1413824..1414729 (+) 906 WP_017551555.1 RodZ family helix-turn-helix domain-containing protein -
  IR208_RS06610 (IR208_06610) pgsA 1414786..1415364 (+) 579 WP_014098504.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IR208_RS06615 (IR208_06615) cinA 1415528..1416760 (+) 1233 WP_014098503.1 competence/damage-inducible protein A Machinery gene
  IR208_RS06620 (IR208_06620) recA 1417028..1418095 (+) 1068 WP_014098502.1 recombinase RecA Machinery gene
  IR208_RS06625 (IR208_06625) rny 1418578..1420140 (+) 1563 WP_014098501.1 ribonuclease Y -
  IR208_RS06630 (IR208_06630) - 1420227..1421027 (+) 801 WP_014098500.1 TIGR00282 family metallophosphoesterase -
  IR208_RS06635 (IR208_06635) spoVS 1421402..1421662 (+) 261 WP_014098499.1 stage V sporulation protein SpoVS -
  IR208_RS06640 (IR208_06640) - 1421852..1422763 (+) 912 WP_014098498.1 peptidase U32 family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38449.47 Da        Isoelectric Point: 4.6977

>NTDB_id=504577 IR208_RS06620 WP_014098502.1 1417028..1418095(+) (recA) [Heyndrickxia coagulans strain BC01]
MNDRQEALDKALKQIEKQFGKGSIMRLGEQTDRVVSTIPTGSLALDIALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPRAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGNKT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQGRENAKQFLKENADLKNEIAAK
IREHYDLTEDAGSHETEKAIDEQEAVEGQEELNLE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=504577 IR208_RS06620 WP_014098502.1 1417028..1418095(+) (recA) [Heyndrickxia coagulans strain BC01]
GTGAATGATCGTCAAGAAGCCTTAGACAAGGCTCTGAAACAAATAGAAAAGCAATTTGGTAAGGGTTCCATTATGCGGTT
GGGCGAGCAGACCGACCGGGTTGTCTCCACGATCCCGACCGGTTCGCTTGCGCTTGATATTGCCCTTGGTGTCGGTGGTT
ACCCGCGCGGCCGTGTCATTGAAATATACGGCCCTGAAAGTTCTGGTAAAACAACGGTTGCCCTGCATGCGATTGCGGAA
GTCCAGGCACAGGGTGGACAAGCGGCGTTTATTGATGCGGAACATGCACTTGACCCGGTTTATGCCCAAAAGCTCGGTGT
CAATATTGATGAGCTGCTCCTGTCCCAGCCGGATACGGGCGAACAGGCGCTGGAAATTGCGGAAGCGCTCGTCCGCAGCG
GCGCAGTGGATATTGTGGTCGTTGACTCCGTTGCTGCGCTTGTGCCGAGAGCGGAAATTGAAGGGGAAATGGGCGATTCC
CACGTCGGCCTCCAGGCACGGCTGATGTCCCAGGCGCTGCGGAAATTATCGGGTGCAATCAACAAATCGAACACGATTGC
GATTTTCATTAACCAAATCCGGGAAAAAGTCGGCGTAATGTTCGGTAATCCTGAAGTCACACCGGGCGGCCGTGCGCTCA
AATTCTACTCATCCGTGCGCCTTGAAGTGCGCCGTGCCGAACAGATCAAACAAGGGAGCGACATTGTCGGCAACAAAACG
AAAATCAAGGTTGTCAAAAACAAAGTAGCGCCTCCGTTTAAAACGGCAGAAGTGGATATTATGTACGGCGAGGGGATCTC
AAAAGAAGGCGAGATCGTCGATATGGGAAGCGACCTTGACATCATCCAAAAAAGCGGGGCCTGGTATGCTTATAACGGCG
AGCGGCTCGGCCAGGGGCGTGAAAATGCGAAGCAATTTTTAAAGGAAAATGCGGATCTGAAAAACGAGATTGCCGCAAAA
ATCCGGGAACATTACGACCTGACAGAAGATGCCGGTTCCCATGAAACCGAGAAAGCTATAGATGAACAAGAAGCTGTGGA
AGGACAGGAAGAATTAAATTTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C5CPF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.85

92.113

0.8
  recA Latilactobacillus sakei subsp. sakei 23K

75.915

92.394

0.701
  recA Streptococcus pneumoniae D39

67.036

100

0.682
  recA Streptococcus pneumoniae Rx1

67.036

100

0.682
  recA Streptococcus pneumoniae R6

67.036

100

0.682
  recA Streptococcus pneumoniae TIGR4

67.036

100

0.682
  recA Streptococcus mitis NCTC 12261

67.039

100

0.676
  recA Streptococcus mitis SK321

65.385

100

0.67
  recA Streptococcus mutans UA159

66.48

100

0.67
  recA Streptococcus pyogenes NZ131

71.037

92.394

0.656
  recA Lactococcus lactis subsp. cremoris KW2

67.568

93.803

0.634
  recA Neisseria gonorrhoeae MS11

66.77

90.704

0.606
  recA Neisseria gonorrhoeae MS11

66.77

90.704

0.606
  recA Neisseria gonorrhoeae strain FA1090

66.77

90.704

0.606
  recA Acinetobacter baumannii D1279779

62.281

96.338

0.6
  recA Acinetobacter baylyi ADP1

61.207

98.028

0.6
  recA Vibrio cholerae strain A1552

66.044

90.423

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

90.423

0.597
  recA Ralstonia pseudosolanacearum GMI1000

67.516

88.451

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.415

92.394

0.586
  recA Pseudomonas stutzeri DSM 10701

60.641

96.62

0.586
  recA Helicobacter pylori 26695

63.975

90.704

0.58
  recA Helicobacter pylori strain NCTC11637

63.975

90.704

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.043

90.704

0.572
  recA Glaesserella parasuis strain SC1401

62.382

89.859

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

90.141

0.558