Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IT882_RS05015 Genome accession   NZ_CP064760
Coordinates   1057862..1058911 (+) Length   349 a.a.
NCBI ID   WP_195693430.1    Uniprot ID   -
Organism   Microbacterium schleiferi strain A32-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052862..1063911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT882_RS04990 (IT882_04990) - 1053106..1055762 (+) 2657 Protein_1025 DNA translocase FtsK 4TM domain-containing protein -
  IT882_RS04995 (IT882_04995) pgsA 1055798..1056388 (+) 591 WP_195693427.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IT882_RS05000 (IT882_05000) - 1056385..1056875 (+) 491 Protein_1027 CinA family protein -
  IT882_RS05005 (IT882_05005) - 1057054..1057362 (+) 309 WP_195693428.1 helix-turn-helix domain-containing protein -
  IT882_RS05010 (IT882_05010) - 1057380..1057601 (+) 222 WP_195693429.1 DUF3046 domain-containing protein -
  IT882_RS05015 (IT882_05015) recA 1057862..1058911 (+) 1050 WP_195693430.1 recombinase RecA Machinery gene
  IT882_RS05020 (IT882_05020) - 1058914..1059615 (+) 702 WP_195693431.1 regulatory protein RecX -
  IT882_RS05025 (IT882_05025) miaB 1059686..1061233 (+) 1548 WP_195693432.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IT882_RS05030 (IT882_05030) miaA 1061368..1062326 (+) 959 Protein_1033 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  IT882_RS05035 (IT882_05035) dapF 1062331..1063203 (+) 873 WP_195693433.1 diaminopimelate epimerase -
  IT882_RS05040 (IT882_05040) - 1063224..1063864 (-) 641 Protein_1035 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37391.67 Da        Isoelectric Point: 5.3278

>NTDB_id=504523 IT882_RS05015 WP_195693430.1 1057862..1058911(+) (recA) [Microbacterium schleiferi strain A32-1]
MPTPADREKALDSALAQIDRQFGKGSVMRLGSDERAPVEIIPTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAIDLVVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHGIVKKSGAWYTYDGEQLGQGKENARSFLLKNEDIAADI
ETKIKEKLGIGGAKPASDVEDELAKRRPA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=504523 IT882_RS05015 WP_195693430.1 1057862..1058911(+) (recA) [Microbacterium schleiferi strain A32-1]
ATGCCCACACCCGCAGACCGCGAGAAGGCGCTCGATTCAGCGCTCGCACAGATCGATCGGCAGTTCGGAAAGGGCTCGGT
GATGCGACTGGGCAGCGACGAGCGTGCGCCGGTCGAGATCATCCCCACGGGCTCCATCGCTCTCGACGTTGCGCTCGGCG
TCGGCGGACTCCCGCGCGGGCGCATCATCGAGATCTACGGTCCGGAGTCCTCGGGTAAGACCACCCTCACTCTGCACGCG
ATCGCCAATGTGCAGCGCGCGGGAGGGATCGCGGCCTTCATCGACGCGGAGCACGCGCTCGACCCCGACTACGCCCAGAA
GCTCGGTGTCGACATCGACCAGCTTCTGGTCTCCCAGCCCGACACGGGCGAGCAGGCGCTCGAGATCGCCGACATGCTCG
TGCGCTCCGGTGCCATCGACCTCGTTGTGATCGACTCGGTCGCCGCGCTCGTGCCCAAGGCCGAGATCGAGGGTGAGATG
GGCGACTCGCACGTGGGTCTGCAGGCGCGGCTGATGTCGCAGGCGCTGCGCAAGCTCACCGGTGGGCTCAACCAGACCAA
CACGACGATGATCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTGTTCTTCGGCTCGCCCGAGACCACCGCCGGTGGAA
AGGCGCTGAAGTTCTATGCATCGGTACGCCTCGACATCCGCCGTATCGAGACGCTCAAGGACGGCACGGATGCCGTCGGC
AACCGCACGCGCGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTGTACGGCAC
GGGAATCTCGCGCGAGGGAAGTCTCATCGATTTCGGCGTCGAGCACGGGATCGTGAAGAAGTCCGGTGCGTGGTACACCT
ACGACGGCGAGCAGCTGGGTCAGGGTAAAGAGAACGCTCGGTCGTTCCTCCTCAAGAACGAAGACATCGCGGCCGATATC
GAGACCAAGATCAAAGAGAAGCTCGGTATCGGCGGGGCAAAGCCCGCATCCGATGTCGAAGACGAGCTCGCCAAGCGGCG
CCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

67.062

96.562

0.648
  recA Pseudomonas stutzeri DSM 10701

65.882

97.421

0.642
  recA Bacillus subtilis subsp. subtilis str. 168

68.405

93.41

0.639
  recA Ralstonia pseudosolanacearum GMI1000

67.683

93.983

0.636
  recA Acinetobacter baylyi ADP1

67.802

92.55

0.628
  recA Neisseria gonorrhoeae MS11

66.871

93.41

0.625
  recA Neisseria gonorrhoeae MS11

66.871

93.41

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.871

93.41

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

92.55

0.619
  recA Vibrio cholerae strain A1552

66.873

92.55

0.619
  recA Latilactobacillus sakei subsp. sakei 23K

63.205

96.562

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.174

95.702

0.605
  recA Streptococcus mitis SK321

60.405

99.14

0.599
  recA Streptococcus mitis NCTC 12261

60.405

99.14

0.599
  recA Helicobacter pylori 26695

63.333

94.556

0.599
  recA Helicobacter pylori strain NCTC11637

63.333

94.556

0.599
  recA Streptococcus pneumoniae D39

59.195

99.713

0.59
  recA Streptococcus pneumoniae Rx1

59.195

99.713

0.59
  recA Streptococcus pneumoniae R6

59.195

99.713

0.59
  recA Streptococcus pneumoniae TIGR4

59.195

99.713

0.59
  recA Glaesserella parasuis strain SC1401

63.077

93.123

0.587
  recA Lactococcus lactis subsp. cremoris KW2

62.121

94.556

0.587
  recA Streptococcus mutans UA159

61.398

94.269

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

94.269

0.576
  recA Streptococcus pyogenes NZ131

60.976

93.983

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.769

93.123

0.547