Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HCD_RS03235 Genome accession   NC_017735
Coordinates   674618..675661 (-) Length   347 a.a.
NCBI ID   WP_014659160.1    Uniprot ID   I0ERT0
Organism   Helicobacter cetorum MIT 99-5656     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669618..680661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCD_RS03205 (HCD_03135) - 670408..670755 (-) 348 WP_014659154.1 hypothetical protein -
  HCD_RS03210 (HCD_03140) - 670955..671911 (-) 957 WP_014659155.1 PDC sensor domain-containing protein -
  HCD_RS03215 (HCD_03145) - 671922..672416 (-) 495 WP_014659156.1 shikimate kinase -
  HCD_RS03220 (HCD_03150) - 672420..673004 (-) 585 WP_041594887.1 AMIN domain-containing protein -
  HCD_RS03225 (HCD_03155) - 673029..673304 (-) 276 WP_014659158.1 hypothetical protein -
  HCD_RS03230 (HCD_03160) eno 673297..674577 (-) 1281 WP_014659159.1 phosphopyruvate hydratase -
  HCD_RS03235 (HCD_03165) recA 674618..675661 (-) 1044 WP_014659160.1 recombinase RecA Machinery gene
  HCD_RS03240 (HCD_03170) - 675761..676624 (+) 864 WP_014659161.1 menaquinone biosynthesis family protein -
  HCD_RS03245 (HCD_03175) - 676621..677394 (-) 774 WP_014659162.1 hypothetical protein -
  HCD_RS03250 (HCD_03180) - 677726..678313 (-) 588 WP_014659163.1 hypothetical protein -
  HCD_RS03255 (HCD_03185) - 678324..678920 (-) 597 WP_014659164.1 hypothetical protein -
  HCD_RS03260 (HCD_03195) - 679021..679227 (-) 207 WP_014659166.1 DUF4006 family protein -
  HCD_RS03265 (HCD_03200) ccoP 679239..680117 (-) 879 WP_014659167.1 cytochrome-c oxidase, cbb3-type subunit III -
  HCD_RS03270 (HCD_03205) - 680119..680337 (-) 219 WP_014659168.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37706.59 Da        Isoelectric Point: 5.7156

>NTDB_id=50450 HCD_RS03235 WP_014659160.1 674618..675661(-) (recA) [Helicobacter cetorum MIT 99-5656]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGIPKGRIIEVYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDIENLLVSQPDTGEQALEILETITRSGAIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKVLANE
IILKIKESIGTTEEIMPLPDEPLDEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=50450 HCD_RS03235 WP_014659160.1 674618..675661(-) (recA) [Helicobacter cetorum MIT 99-5656]
ATGGCGATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATTAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTAAGATTAGGCGATAAGCAAGTAGAAAAGATTGATGCCATTTCTACCGGCTCATTAGGATTAGATTTAGCTTTAGGGA
TTGGGGGAATTCCGAAGGGTAGAATTATTGAAGTGTATGGGCCAGAATCAAGCGGAAAGACCACTTTGAGCTTACACATC
ATTGCAGAGTGCCAAAAAAATGGGGGCGTGTGCGCGTTTATTGATGCTGAGCATGCCCTAGATGTGCATTATGCGAAGAG
ACTTGGCGTAGATATTGAAAATTTGCTAGTCTCTCAGCCAGATACAGGCGAGCAAGCCCTAGAAATTTTAGAGACTATCA
CTAGAAGTGGGGCGATTGATTTGGTGGTAGTGGATTCTGTAGCCGCACTCACGCCTAAAGCAGAGATTGATGGGGATATG
GGAGACCAGCATGTGGGCTTACAAGCAAGGCTTATGAGTCATGCATTAAGAAAAATCACCGGCGTGTTACACAAAATGAA
TACCACACTAATTTTTATCAATCAAATTAGAATGAAAATTGGCATGATGGGTTATGGAAGTCCAGAGACTACAACAGGGG
GGAATGCCTTAAAATTTTATGCGAGCGTGAGAATTGATATTAGAAGAATTGCCGCTCTTAAACAAAACGAACAGCATATC
GGTAATAGAGCGAAAGCCAAAGTGGTAAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATTATGTTTGG
GGAAGGGATTTCTAAAGAAGGCGAAATTATTGATTATGGCGTGAAACTAGATATTGTGGATAAGAGTGGGGCATGGCTAA
GTTATCAAGATAAAAAGCTAGGGCAGGGTAGAGAAAATGCTAAGGCTTTATTGAAAGAAGATAAAGTCCTAGCGAATGAA
ATCATTCTTAAGATTAAAGAGAGTATTGGCACTACTGAAGAGATTATGCCCTTACCTGATGAACCTTTAGATGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0ERT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

97.118

100

0.971
  recA Helicobacter pylori 26695

96.542

100

0.965
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.744

94.524

0.735
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

93.372

0.622
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.846

93.66

0.617
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Acinetobacter baumannii D1279779

64.545

95.101

0.614
  recA Acinetobacter baylyi ADP1

64.134

94.813

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.554

95.677

0.608
  recA Ralstonia pseudosolanacearum GMI1000

61.538

97.406

0.599
  recA Pseudomonas stutzeri DSM 10701

62.121

95.101

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.261

95.965

0.588
  recA Vibrio cholerae strain A1552

61.261

95.965

0.588
  recA Glaesserella parasuis strain SC1401

59.451

94.524

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

55.908

100

0.559
  recA Streptococcus pneumoniae R6

58.359

94.813

0.553
  recA Streptococcus pneumoniae Rx1

58.359

94.813

0.553
  recA Streptococcus pneumoniae D39

58.359

94.813

0.553
  recA Streptococcus pneumoniae TIGR4

58.359

94.813

0.553
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus pyogenes NZ131

57.879

95.101

0.55
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.751

94.813

0.548
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment