Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IVG45_RS17980 Genome accession   NZ_CP064653
Coordinates   3847252..3848307 (+) Length   351 a.a.
NCBI ID   WP_196435157.1    Uniprot ID   A0A7T0JN76
Organism   Methylomonas sp. LL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3842252..3853307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVG45_RS17960 (IVG45_17925) - 3842680..3843657 (+) 978 WP_196435153.1 ABC transporter permease -
  IVG45_RS17965 (IVG45_17930) - 3843657..3845000 (+) 1344 WP_196435154.1 ABC transporter permease -
  IVG45_RS17970 (IVG45_17935) - 3844993..3846594 (+) 1602 WP_196435155.1 dipeptide ABC transporter ATP-binding protein -
  IVG45_RS17975 (IVG45_17940) - 3846622..3847134 (+) 513 WP_196435156.1 hypothetical protein -
  IVG45_RS17980 (IVG45_17945) recA 3847252..3848307 (+) 1056 WP_196435157.1 recombinase RecA Machinery gene
  IVG45_RS17985 (IVG45_17950) - 3848264..3848770 (+) 507 WP_196435158.1 regulatory protein RecX -
  IVG45_RS17990 (IVG45_17955) - 3848901..3849158 (+) 258 WP_196435159.1 hypothetical protein -
  IVG45_RS17995 (IVG45_17960) - 3849164..3849457 (+) 294 WP_196435160.1 type II toxin-antitoxin system VapC family toxin -
  IVG45_RS18000 (IVG45_17965) alaS 3849509..3852118 (+) 2610 WP_196435161.1 alanine--tRNA ligase -
  IVG45_RS18005 (IVG45_17970) - 3852179..3852379 (+) 201 WP_196435162.1 hypothetical protein -
  IVG45_RS18010 (IVG45_17975) - 3852440..3852661 (+) 222 WP_230874638.1 DUF4160 domain-containing protein -
  IVG45_RS18015 (IVG45_17980) - 3852674..3852916 (+) 243 WP_196435164.1 DUF2442 domain-containing protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37871.26 Da        Isoelectric Point: 5.0423

>NTDB_id=504054 IVG45_RS17980 WP_196435157.1 3847252..3848307(+) (recA) [Methylomonas sp. LL1]
MDENKKKALGAALMQIEKQFGKGSVMRMGDVAASRDIEVVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLTLQTI
AQMQKLGGTAAFVDAEHALDPVYAQKIGVNIDDLLVSQPDTGEQALEITDMLVRSGAVDIVVIDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGN
ETRVKVVKNKVAPPFKQADFEILYGEGVSFFGELVDLGVEFGFVQKSGSWYAYNNEKIGQGKDNAKQFLRDNPDKAKELE
AAIREKAFAKLATVAPSHDTDADDTEFVDGD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=504054 IVG45_RS17980 WP_196435157.1 3847252..3848307(+) (recA) [Methylomonas sp. LL1]
ATGGACGAGAACAAAAAAAAGGCGCTAGGCGCCGCGTTGATGCAGATCGAGAAACAATTCGGCAAAGGCTCCGTGATGCG
GATGGGCGATGTCGCCGCCAGCCGCGATATTGAGGTCGTGTCGACCGGCTCGCTGTCCTTGGATATTGCCCTCGGTGTCG
GCGGCTTGCCGCGCGGGCGCATCATCGAAATCTATGGCCCGGAGTCGTCCGGTAAAACCACCTTGACCCTGCAAACCATC
GCCCAGATGCAGAAACTGGGCGGCACGGCGGCGTTTGTCGATGCCGAGCACGCGCTGGATCCGGTCTATGCGCAAAAGAT
CGGCGTCAATATCGACGATTTATTGGTTTCCCAACCGGATACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTAC
GCTCCGGCGCGGTCGACATCGTGGTGATCGACTCGGTGGCGGCCTTGACGCCGAAAGCCGAAATCGAAGGCGACATGGGC
GATTCGCACATGGGCTTGCAGGCGCGTTTGATGTCGCAAGCCTTGCGTAAATTGACCGCCAACATCAAGCGTTCCAACAC
CTTGGTGATTTTCATCAACCAGTTGCGGATGAAAATCGGCGTGATGTTCGGTAATCCCGAAACCACCACCGGCGGTAACG
CCTTGAAATTTTATGCCTCGGTACGTTTGGATATCCGCCGCATCGGCGCGATCAAGAAAGGCGACGAGGTGATTGGTAAC
GAAACTCGCGTCAAAGTGGTCAAAAACAAGGTGGCGCCGCCGTTCAAACAGGCCGATTTCGAGATTTTGTACGGCGAAGG
CGTGTCCTTCTTCGGCGAACTGGTCGATCTGGGGGTCGAGTTTGGCTTCGTACAAAAGTCCGGTTCCTGGTACGCATACA
ACAACGAGAAAATCGGCCAAGGCAAGGATAATGCCAAGCAGTTCTTGAGAGATAATCCGGATAAAGCCAAGGAACTGGAA
GCCGCAATCCGTGAAAAAGCCTTTGCAAAACTGGCAACGGTAGCGCCATCACATGATACAGACGCGGACGACACCGAATT
CGTCGACGGCGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T0JN76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.487

99.43

0.701
  recA Vibrio cholerae strain A1552

70.487

99.43

0.701
  recA Acinetobacter baylyi ADP1

70.201

99.43

0.698
  recA Pseudomonas stutzeri DSM 10701

74.847

92.877

0.695
  recA Acinetobacter baumannii D1279779

73.926

92.877

0.687
  recA Glaesserella parasuis strain SC1401

68.588

98.86

0.678
  recA Ralstonia pseudosolanacearum GMI1000

75.806

88.319

0.67
  recA Neisseria gonorrhoeae MS11

71.296

92.308

0.658
  recA Neisseria gonorrhoeae MS11

71.296

92.308

0.658
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.308

0.658
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.066

95.157

0.638
  recA Bacillus subtilis subsp. subtilis str. 168

67.391

91.738

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

92.593

0.595
  recA Streptococcus mutans UA159

63.497

92.877

0.59
  recA Streptococcus pyogenes NZ131

62.805

93.447

0.587
  recA Streptococcus pneumoniae R6

62.577

92.877

0.581
  recA Streptococcus pneumoniae TIGR4

62.577

92.877

0.581
  recA Streptococcus pneumoniae Rx1

62.577

92.877

0.581
  recA Streptococcus pneumoniae D39

62.577

92.877

0.581
  recA Streptococcus mitis NCTC 12261

62.963

92.308

0.581
  recA Streptococcus mitis SK321

62.963

92.308

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

63.354

91.738

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

94.017

0.573
  recA Helicobacter pylori strain NCTC11637

61.656

92.877

0.573
  recA Helicobacter pylori 26695

61.35

92.877

0.57
  recA Lactococcus lactis subsp. cremoris KW2

61.42

92.308

0.567