Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HBHAL_RS10325 Genome accession   NC_017668
Coordinates   2103645..2104706 (+) Length   353 a.a.
NCBI ID   WP_014643349.1    Uniprot ID   -
Organism   Halobacillus halophilus DSM 2266     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2098645..2109706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBHAL_RS10300 (HBHAL_3104) - 2099378..2099638 (+) 261 WP_014643343.1 DUF3243 domain-containing protein -
  HBHAL_RS10305 (HBHAL_3105) - 2099794..2100585 (+) 792 WP_014643344.1 DUF3388 domain-containing protein -
  HBHAL_RS20395 (HBHAL_3106) - 2100606..2101556 (+) 951 WP_014643345.1 RodZ family helix-turn-helix domain-containing protein -
  HBHAL_RS10315 (HBHAL_3108) pgsA 2101663..2102241 (+) 579 WP_014643347.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HBHAL_RS10320 (HBHAL_3109) - 2102238..2103479 (+) 1242 WP_014643348.1 competence/damage-inducible protein A -
  HBHAL_RS10325 (HBHAL_3110) recA 2103645..2104706 (+) 1062 WP_014643349.1 recombinase RecA Machinery gene
  HBHAL_RS10330 (HBHAL_3111) rny 2105057..2106619 (+) 1563 WP_014643350.1 ribonuclease Y -
  HBHAL_RS10335 (HBHAL_3112) - 2106697..2107494 (+) 798 WP_014643351.1 TIGR00282 family metallophosphoesterase -
  HBHAL_RS10340 (HBHAL_3113) - 2107603..2107863 (+) 261 WP_014643352.1 stage V sporulation protein S -
  HBHAL_RS10345 (HBHAL_3114) tdh 2108041..2109081 (+) 1041 WP_014643353.1 L-threonine 3-dehydrogenase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38715.92 Da        Isoelectric Point: 5.8270

>NTDB_id=50254 HBHAL_RS10325 WP_014643349.1 2103645..2104706(+) (recA) [Halobacillus halophilus DSM 2266]
MSDRKQALDSALRQIEKQFGKGSIMKMGDGSEQKVNTVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
AQRKGGTAAFIDAEHALDPVYARRLGVDIEELLLSQPDTGEQALEIAEALVRSGAVDMVVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
RLKVVKNKVAPPFKQAEVDIMYGEGISREGELLDIGTDLDLIQKSGSWYSYEGERLGQGRENAKQFLKENNHVYEEVKRI
IRDHYQMEPKEEEKGEKNEKNEKKSDSQETLDV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=50254 HBHAL_RS10325 WP_014643349.1 2103645..2104706(+) (recA) [Halobacillus halophilus DSM 2266]
ATGAGTGATCGTAAACAAGCATTAGATTCAGCTTTGCGTCAAATAGAGAAACAATTTGGTAAAGGTTCTATCATGAAAAT
GGGGGATGGAAGCGAACAGAAAGTAAATACAGTACCCAGCGGGTCGCTGGCACTGGATGTTGCACTGGGAGTAGGCGGCT
ATCCTCGAGGTAGAATTGTAGAAATATATGGACCGGAATCGTCCGGTAAAACCACAGTAGCTCTTCATGCTATTGCAGAA
GCACAAAGAAAAGGCGGCACGGCGGCTTTCATTGATGCAGAGCATGCGCTTGATCCAGTATACGCGCGCCGTTTAGGTGT
AGATATCGAAGAACTTCTGTTATCTCAGCCTGATACAGGGGAGCAAGCATTGGAAATAGCGGAGGCGCTTGTTCGAAGCG
GTGCAGTAGATATGGTCGTTATTGATTCCGTAGCCGCCCTGGTACCGAAAGCAGAAATTGAAGGGGAAATGGGGGACGCG
CATGTAGGATTGCAGGCTCGTCTAATGTCTCAAGCTCTTCGTAAGCTATCAGGAGCAATCAGCAAGTCTAAAACAACTGC
CATCTTTATTAATCAGATTCGTGAAAAAGTTGGGGTTATGTTTGGTAATCCTGAAACGACTCCGGGCGGCCGTGCTCTTA
AGTTCTACTCCTCTGTTCGTTTAGAGGTGCGCCGAGCGGAAACCTTAAAACAAGGAAATGAAATGGTCGGTAATAAAACA
CGTCTTAAAGTGGTAAAAAATAAAGTTGCCCCTCCTTTCAAACAAGCAGAAGTCGACATCATGTACGGGGAAGGGATCTC
CAGAGAAGGCGAATTACTTGATATCGGGACCGATCTTGATTTGATACAGAAAAGCGGTTCCTGGTACTCTTACGAAGGTG
AACGATTAGGTCAGGGAAGAGAGAATGCTAAACAGTTCCTTAAGGAAAATAATCATGTATATGAAGAAGTTAAGCGCATT
ATTCGTGATCATTACCAAATGGAGCCTAAAGAAGAGGAAAAAGGTGAAAAAAATGAAAAAAATGAAAAAAAATCAGACAG
TCAGGAAACTCTTGACGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.707

92.918

0.759
  recA Latilactobacillus sakei subsp. sakei 23K

73.716

93.768

0.691
  recA Streptococcus mitis SK321

64.246

100

0.652
  recA Streptococcus mitis NCTC 12261

64.246

100

0.652
  recA Streptococcus mutans UA159

63.966

100

0.649
  recA Streptococcus pneumoniae R6

64.957

99.433

0.646
  recA Streptococcus pneumoniae Rx1

64.957

99.433

0.646
  recA Streptococcus pneumoniae D39

64.957

99.433

0.646
  recA Streptococcus pneumoniae TIGR4

64.957

99.433

0.646
  recA Neisseria gonorrhoeae MS11

65.029

98.017

0.637
  recA Neisseria gonorrhoeae MS11

65.029

98.017

0.637
  recA Neisseria gonorrhoeae strain FA1090

65.029

98.017

0.637
  recA Streptococcus pyogenes NZ131

67.584

92.635

0.626
  recA Lactococcus lactis subsp. cremoris KW2

66.769

92.068

0.615
  recA Ralstonia pseudosolanacearum GMI1000

67.302

89.235

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.242

93.484

0.601
  recA Glaesserella parasuis strain SC1401

60.983

98.017

0.598
  recA Vibrio cholerae strain A1552

64.486

90.935

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

90.935

0.586
  recA Acinetobacter baylyi ADP1

58.974

99.433

0.586
  recA Pseudomonas stutzeri DSM 10701

64.375

90.652

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.294

96.317

0.581
  recA Acinetobacter baumannii D1279779

63.043

91.218

0.575
  recA Helicobacter pylori strain NCTC11637

61.801

91.218

0.564
  recA Helicobacter pylori 26695

61.801

91.218

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

89.802

0.558

Multiple sequence alignment