Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IUJ42_RS04460 Genome accession   NZ_CP064359
Coordinates   949792..950841 (+) Length   349 a.a.
NCBI ID   WP_002439552.1    Uniprot ID   A0A0Q1CVH7
Organism   Staphylococcus epidermidis strain PartG-Sepidermidis-RM8376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 944792..955841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ42_RS04435 (IUJ42_04470) - 945318..946022 (+) 705 WP_002439542.1 SDR family oxidoreductase -
  IUJ42_RS04440 (IUJ42_04475) - 946175..947002 (+) 828 WP_002456221.1 YmfK family protein -
  IUJ42_RS04445 (IUJ42_04480) - 947021..947413 (+) 393 WP_001832565.1 helix-turn-helix domain-containing protein -
  IUJ42_RS04450 (IUJ42_04485) pgsA 947442..948023 (+) 582 WP_002439546.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IUJ42_RS04455 (IUJ42_04490) - 948476..949621 (+) 1146 WP_002439549.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  IUJ42_RS04460 (IUJ42_04495) recA 949792..950841 (+) 1050 WP_002439552.1 recombinase RecA Machinery gene
  IUJ42_RS04465 (IUJ42_04500) rny 951067..952626 (+) 1560 WP_001829512.1 ribonuclease Y -
  IUJ42_RS04470 (IUJ42_04505) - 952715..952930 (-) 216 WP_002439555.1 hypothetical protein -
  IUJ42_RS04475 (IUJ42_04510) - 953094..953888 (+) 795 WP_001832548.1 TIGR00282 family metallophosphoesterase -
  IUJ42_RS04480 (IUJ42_04515) - 954001..955761 (+) 1761 WP_002468023.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37927.75 Da        Isoelectric Point: 4.9995

>NTDB_id=501027 IUJ42_RS04460 WP_002439552.1 949792..950841(+) (recA) [Staphylococcus epidermidis strain PartG-Sepidermidis-RM8376]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVDENENEDDSPKTLFDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=501027 IUJ42_RS04460 WP_002439552.1 949792..950841(+) (recA) [Staphylococcus epidermidis strain PartG-Sepidermidis-RM8376]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTCATTAAAAACATGGAAAAATCTTTTGGTAAAGGTGCCGTTATGAA
GTTAGGCGATAATAAAGGTCGCAGAGTATCAAGTACTTCAAGTGGTTCTGTTACAGTTGATAATGCATTAGGGGTTGGAG
GTTATCCTAAAGGAAGAATTATCGAAATATATGGACCTGAAAGTTCAGGTAAGACGACAGTAGCTTTACATGCTATCGCC
GAAGTACAAAAAAACGGTGGTGTAGCAGCATTTATCGATGCCGAACATGCTCTCGATCCAGTATATGCACAAGCATTAGG
TGTAGATATTGATAATTTATACTTATCTCAACCTGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCTTTTGTTCGTA
GTGGTGCTGTGGACATTGTTGTTGTCGATTCAGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCATTAAGAAAGTTATCAGGGGCTATTTCTAAATCTAATACTAC
AGCTATATTTATTAACCAAATTCGTGAAAAGGTCGGTGTGATGTTCGGGAATCCTGAAACAACGCCCGGTGGTAGAGCCC
TAAAATTCTATAGTTCTGTACGTTTAGAGGTAAGAAGAGCAGAGCAGTTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACCAAAATAAAAGTTGTAAAAAATAAAGTTGCACCTCCATTTAGAGTTGCAGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAGGAAGGAGAGCTCATTGATTTAGGTGTAGAGAATGATATCGTTGATAAATCAGGTGCTTGGTATTCTTATAATG
GAGATAGAATGGGCCAAGGTAAAGAAAACGTCAAAAATTATCTTAAGGAAAATCCACAAATCAAAGAAGAAATTGACCGT
AAGTTACGTGAAAAGTTAGGTATTTTCGATGGTGATGTGGATGAAAATGAGAATGAAGACGATTCACCAAAAACTTTATT
TGATGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q1CVH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.41

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

69.679

98.281

0.685
  recA Streptococcus pneumoniae TIGR4

65.805

99.713

0.656
  recA Streptococcus pneumoniae Rx1

65.805

99.713

0.656
  recA Streptococcus pneumoniae D39

65.805

99.713

0.656
  recA Streptococcus pneumoniae R6

65.805

99.713

0.656
  recA Streptococcus pyogenes NZ131

68.693

94.269

0.648
  recA Streptococcus mutans UA159

65.029

99.14

0.645
  recA Acinetobacter baylyi ADP1

64.058

98.854

0.633
  recA Streptococcus mitis NCTC 12261

66.366

95.415

0.633
  recA Streptococcus mitis SK321

66.066

95.415

0.63
  recA Neisseria gonorrhoeae MS11

63.953

98.567

0.63
  recA Neisseria gonorrhoeae MS11

63.953

98.567

0.63
  recA Neisseria gonorrhoeae strain FA1090

63.953

98.567

0.63
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.842

0.625
  recA Acinetobacter baumannii D1279779

66.258

93.41

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

94.269

0.619
  recA Helicobacter pylori 26695

64.939

93.983

0.61
  recA Vibrio cholerae strain A1552

65.031

93.41

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.41

0.607
  recA Helicobacter pylori strain NCTC11637

64.634

93.983

0.607
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.685

0.582
  recA Pseudomonas stutzeri DSM 10701

61.963

93.41

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.842

0.576
  recA Glaesserella parasuis strain SC1401

60.494

92.837

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

90.544

0.556