Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ISX85_RS12440 Genome accession   NZ_CP064353
Coordinates   3040656..3041699 (+) Length   347 a.a.
NCBI ID   WP_007658580.1    Uniprot ID   S0GUY9
Organism   Parabacteroides goldsteinii strain MTS01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3035656..3046699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX85_RS12425 - 3037115..3038452 (-) 1338 WP_010802568.1 hypothetical protein -
  ISX85_RS12430 - 3038996..3040189 (+) 1194 WP_007658575.1 saccharopine dehydrogenase family protein -
  ISX85_RS12435 bcp 3040191..3040649 (+) 459 WP_010802567.1 thioredoxin-dependent thiol peroxidase -
  ISX85_RS12440 recA 3040656..3041699 (+) 1044 WP_007658580.1 recombinase RecA Machinery gene
  ISX85_RS12445 - 3041754..3042791 (+) 1038 WP_010802566.1 GNAT family N-acetyltransferase -
  ISX85_RS12450 - 3042788..3044089 (+) 1302 WP_007658583.1 polysaccharide deacetylase family protein -
  ISX85_RS12455 wecB 3044086..3045171 (+) 1086 WP_010802565.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  ISX85_RS12460 - 3045168..3046415 (+) 1248 WP_010802564.1 glycosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37311.67 Da        Isoelectric Point: 5.0805

>NTDB_id=500972 ISX85_RS12440 WP_007658580.1 3040656..3041699(+) (recA) [Parabacteroides goldsteinii strain MTS01]
MAKEDNLFEEGKTPEGKPAVNADKLKALRAAMDKIEKNYGKGSIMKLGDESIESIEVIPTGSIALNAALGVGGYPKGRVI
EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDNGEQALEIAEQLIRSSAVDIIV
IDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTGAINKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVR
LDIRKIGTLKDGDEMKGNQVRVKVVKNKVAPPFRKAEFDIMFGEGISKAGEIVDLGAELNIIKKSGSWYSYNDTKLGQGR
DAAKQCISDNPELAEELSGLIFEALKG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=500972 ISX85_RS12440 WP_007658580.1 3040656..3041699(+) (recA) [Parabacteroides goldsteinii strain MTS01]
ATGGCAAAAGAAGACAATTTATTCGAAGAGGGAAAAACCCCGGAAGGAAAGCCGGCTGTTAATGCCGACAAGTTAAAAGC
GTTGCGCGCCGCAATGGATAAGATTGAGAAGAACTACGGAAAGGGTTCTATCATGAAACTGGGCGACGAAAGCATTGAAA
GTATCGAAGTTATTCCGACAGGTTCCATCGCCCTGAACGCAGCTTTAGGCGTAGGCGGTTACCCGAAAGGACGTGTAATC
GAGATATACGGTCCGGAATCATCCGGTAAGACAACGCTGGCAATCCATGCTATTGCCGAAGCACAGAAAGCCGGTGGTAT
TGCTGCATTTATCGATGCAGAACATGCCTTCGACCGTTTCTATGCGGAAAAACTGGGTGTCGATGTAGAAAACTTATGGA
TCTCTCAACCGGATAACGGTGAACAGGCTTTGGAAATCGCCGAACAGCTGATCCGTTCTTCTGCAGTAGATATCATCGTT
ATCGACTCTGTGGCAGCATTGACTCCGAAGGCTGAAATCGAAGGCGATATGGGTGACAGCAAGATGGGTTTGCAAGCTCG
TCTGATGTCTCAGGCATTGCGTAAGCTGACCGGAGCGATTAACAAGACCAATACGACTTGTATCTTTATCAACCAGTTGC
GTGACAAGATCGGTGTCATGTTCGGTAACCCGGAAACAACAACCGGTGGTAACGCATTGAAGTTCTACGCATCAGTTCGT
CTGGATATCCGCAAGATCGGAACATTGAAAGATGGTGATGAAATGAAAGGTAACCAGGTACGTGTGAAAGTTGTAAAGAA
CAAGGTTGCACCTCCTTTCCGCAAAGCTGAGTTCGACATCATGTTCGGCGAAGGTATTTCCAAGGCTGGCGAGATCGTAG
ACTTGGGTGCGGAGCTAAATATTATCAAGAAAAGCGGTTCCTGGTATAGCTACAACGATACAAAACTGGGACAGGGACGC
GATGCAGCCAAACAATGCATCAGCGATAACCCCGAACTGGCAGAAGAGCTATCCGGATTGATATTCGAAGCATTGAAAGG
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S0GUY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.988

95.677

0.689
  recA Neisseria gonorrhoeae MS11

65.337

93.948

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.337

93.948

0.614
  recA Neisseria gonorrhoeae MS11

65.337

93.948

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.635

93.084

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

67.949

89.914

0.611
  recA Helicobacter pylori strain NCTC11637

63.72

94.524

0.602
  recA Helicobacter pylori 26695

63.72

94.524

0.602
  recA Ralstonia pseudosolanacearum GMI1000

67.203

89.625

0.602
  recA Glaesserella parasuis strain SC1401

65.605

90.49

0.594
  recA Acinetobacter baylyi ADP1

62.539

93.084

0.582
  recA Acinetobacter baumannii D1279779

61.963

93.948

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.043

93.948

0.573
  recA Vibrio cholerae strain A1552

61.043

93.948

0.573
  recA Streptococcus mitis SK321

62.187

92.219

0.573
  recA Streptococcus mitis NCTC 12261

62.187

92.219

0.573
  recA Streptococcus pneumoniae Rx1

61.875

92.219

0.571
  recA Streptococcus pneumoniae TIGR4

61.875

92.219

0.571
  recA Streptococcus pneumoniae D39

61.875

92.219

0.571
  recA Streptococcus pneumoniae R6

61.875

92.219

0.571
  recA Pseudomonas stutzeri DSM 10701

61.635

91.643

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.091

95.101

0.562
  recA Streptococcus mutans UA159

58.788

95.101

0.559
  recA Streptococcus pyogenes NZ131

60.815

91.931

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.587

90.778

0.559
  recA Lactococcus lactis subsp. cremoris KW2

60.312

92.219

0.556