Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ISP08_RS07680 Genome accession   NZ_CP064056
Coordinates   1570140..1571192 (-) Length   350 a.a.
NCBI ID   WP_048794037.1    Uniprot ID   A0A7T1F8R4
Organism   Staphylococcus lloydii strain 23_2_7_LY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1565140..1576192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISP08_RS07665 (ISP08_07665) - 1566928..1567719 (-) 792 WP_195718236.1 TIGR00282 family metallophosphoesterase -
  ISP08_RS07670 (ISP08_07670) - 1567879..1568094 (+) 216 WP_048794035.1 hypothetical protein -
  ISP08_RS07675 (ISP08_07675) rny 1568151..1569710 (-) 1560 WP_048794036.1 ribonuclease Y -
  ISP08_RS07680 (ISP08_07680) recA 1570140..1571192 (-) 1053 WP_048794037.1 recombinase RecA Machinery gene
  ISP08_RS07685 (ISP08_07685) - 1571361..1572506 (-) 1146 WP_195718237.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ISP08_RS07690 (ISP08_07690) pgsA 1572717..1573295 (-) 579 WP_048794039.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ISP08_RS07695 (ISP08_07695) - 1573338..1573733 (-) 396 WP_195718238.1 helix-turn-helix domain-containing protein -
  ISP08_RS07700 (ISP08_07700) - 1573767..1574603 (-) 837 WP_048794041.1 DUF3388 domain-containing protein -
  ISP08_RS07705 (ISP08_07705) - 1574749..1575453 (-) 705 WP_195718239.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38047.06 Da        Isoelectric Point: 5.3643

>NTDB_id=498849 ISP08_RS07680 WP_048794037.1 1570140..1571192(-) (recA) [Staphylococcus lloydii strain 23_2_7_LY]
MDNDRQKALDTVIKNMEKSFGKGSVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQRKGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVEHEIVDKSGAWYSYNGERMGQGKENVKMFLKENPEIKKDINH
KLREKLGIFDGDVEESESEDNAPNSLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=498849 ISP08_RS07680 WP_048794037.1 1570140..1571192(-) (recA) [Staphylococcus lloydii strain 23_2_7_LY]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTTCAGTTATGAA
ACTGGGCGATAACAAAGGACGCAGAGTTTCAAGCGTTTCAAGTGGCTCAGTTACATTAGATAACGCATTAGGAGTAGGCG
GATATCCTAAAGGTAGAATTGTTGAAATTTATGGACCAGAAAGTTCTGGTAAAACTACTGTTGCGCTACATGCCATTGCA
GAAGTGCAAAGAAAAGGCGGTATTGCAGCATTTATCGATGCTGAACATGCGTTAGATCCAGTTTATGCAGAAGCTTTAGG
CGTAGATATTGATAATTTATATTTATCTCAACCTGACCATGGTGAACAAGGTCTTGAAATTGCAGAGGCCTTCGTGCGAA
GCGGTGCAGTTGACATTGTAGTAGTCGACTCTGTTGCAGCGTTAACACCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCACGTCTAATGTCACAAGCATTACGTAAATTATCAGGTGCTATTTCTAAATCAAATACAAC
AGCGGTGTTTATTAACCAAATTAGAGAAAAAGTCGGCGTTATGTTCGGTAACCCTGAAACGACACCAGGTGGTCGTGCAC
TTAAATTCTATAGTTCAGTTAGATTAGAAGTTCGCCGTGCAGAACAACTAAAACAAGGGCAAGAAATTGTCGGTAACAGA
ACAAAAATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTTAGAGTTGCCGAAGTAGATATTATGTATGGTAAAGGTAT
ATCTAAAGAAGGCGAGTTAATTGATTTAGGTGTCGAACACGAAATCGTAGATAAGTCAGGTGCTTGGTATTCATACAATG
GAGAACGTATGGGTCAAGGTAAGGAAAATGTTAAGATGTTCCTTAAAGAAAACCCTGAAATCAAAAAAGACATTAATCAT
AAATTACGTGAAAAATTAGGCATATTTGATGGTGATGTTGAAGAATCAGAAAGCGAAGATAACGCGCCAAATTCATTATT
TGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1F8R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.301

93.143

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

68.391

99.429

0.68
  recA Streptococcus mutans UA159

66.569

97.429

0.649
  recA Streptococcus mitis NCTC 12261

63.636

100

0.64
  recA Streptococcus pneumoniae Rx1

64.912

97.714

0.634
  recA Streptococcus pneumoniae D39

64.912

97.714

0.634
  recA Streptococcus pneumoniae R6

64.912

97.714

0.634
  recA Streptococcus pneumoniae TIGR4

64.912

97.714

0.634
  recA Streptococcus mitis SK321

64.62

97.714

0.631
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.571

0.623
  recA Streptococcus pyogenes NZ131

66.261

94

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

97.429

0.62
  recA Neisseria gonorrhoeae MS11

63.081

98.286

0.62
  recA Neisseria gonorrhoeae MS11

63.081

98.286

0.62
  recA Neisseria gonorrhoeae strain FA1090

63.081

98.286

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

93.143

0.614
  recA Vibrio cholerae strain A1552

65.951

93.143

0.614
  recA Acinetobacter baylyi ADP1

65.951

93.143

0.614
  recA Acinetobacter baumannii D1279779

64.724

93.143

0.603
  recA Ralstonia pseudosolanacearum GMI1000

66.454

89.429

0.594
  recA Glaesserella parasuis strain SC1401

59.599

99.714

0.594
  recA Helicobacter pylori 26695

63.11

93.714

0.591
  recA Helicobacter pylori strain NCTC11637

62.805

93.714

0.589
  recA Pseudomonas stutzeri DSM 10701

62.577

93.143

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

94.571

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.429

0.551