Detailed information NTG0049762

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: SSUD12_RS00400
• Genome accession: NC_017621
• Coordinates: 69125..70276 (+)
• Length: 383 a.a.
• NCBI ID: WP_014637287.1
• Uniprot ID: G7SIW5
• Organism: Streptococcus suis D12
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	70507..71800	69125..70276	flank	231

Gene organization within MGE regions

Location: 69125..71800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUD12_RS00400 (SSUD12_0066)	recA	69125..70276 (+)	1152	WP_014637287.1	recombinase RecA	Machinery gene
SSUD12_RS10855	-	70507..71800 (-)	1294	Protein_62	IS4 family transposase	-

Sequence

Protein

• Length: 383 a.a.
• Molecular weight: 40890.62 Da
• Isoelectric Point: 4.8910

>NTDB_id=49762 SSUD12_RS00400 WP_014637287.1 69125..70276(+) (recA) [Streptococcus suis D12]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEETPVVAEEIQDVILDLDGGIELED

Nucleotide

• Length: 1152 bp

>NTDB_id=49762 SSUD12_RS00400 WP_014637287.1 69125..70276(+) (recA) [Streptococcus suis D12]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGCTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTCTTGTCCCAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATAGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATCGATGGCGATATTGGTGATAGTCATGTTGGCTTGCAGGCTCGTATGATGAGTCA
GGCTATGCGCAAACTCGGAGCATCCATCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGTCGTGCGCTAAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACGCAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGCTT
GATTGAAGCAGATGGAGTTGAAGAGGTAGCGACCGAAGAAACTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (22-287)

3D structure

• AlphaFold DB: G7SIW5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Streptococcus mutans UA159	85.938	100	0.862
recA	Streptococcus pyogenes NZ131	84.856	100	0.849
recA	Streptococcus pneumoniae R6	83.161	100	0.838
recA	Streptococcus pneumoniae Rx1	83.161	100	0.838
recA	Streptococcus pneumoniae D39	83.161	100	0.838
recA	Streptococcus pneumoniae TIGR4	83.161	100	0.838
recA	Streptococcus mitis NCTC 12261	83.508	99.739	0.833
recA	Streptococcus mitis SK321	82.984	99.739	0.828
recA	Lactococcus lactis subsp. cremoris KW2	75.143	91.384	0.687
recA	Latilactobacillus sakei subsp. sakei 23K	63.585	93.211	0.593
recA	Bacillus subtilis subsp. subtilis str. 168	68.085	85.901	0.585
recA	Acinetobacter baumannii D1279779	60.116	90.339	0.543
recA	Neisseria gonorrhoeae MS11	62.236	86.423	0.538
recA	Neisseria gonorrhoeae MS11	62.236	86.423	0.538
recA	Neisseria gonorrhoeae strain FA1090	62.236	86.423	0.538
recA	Pseudomonas stutzeri DSM 10701	57.507	92.167	0.53
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.479	87.206	0.527
recA	Acinetobacter baylyi ADP1	61.538	84.856	0.522
recA	Vibrio cholerae strain A1552	61.538	84.856	0.522
recA	Vibrio cholerae O1 biovar El Tor strain E7946	61.538	84.856	0.522
recA	Glaesserella parasuis strain SC1401	60.923	84.856	0.517
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.681	84.334	0.512
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.61	86.423	0.507
recA	Ralstonia pseudosolanacearum GMI1000	60.568	82.768	0.501
recA	Helicobacter pylori strain NCTC11637	57.879	86.162	0.499
recA	Helicobacter pylori 26695	57.879	86.162	0.499