Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IRI77_RS23500 Genome accession   NZ_CP063849
Coordinates   5974151..5975236 (-) Length   361 a.a.
NCBI ID   WP_194447442.1    Uniprot ID   A0A7S7NLD2
Organism   Paludibaculum fermentans strain P105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5969151..5980236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRI77_RS23470 (IRI77_23470) hslU 5969331..5970689 (+) 1359 WP_194447437.1 ATP-dependent protease ATPase subunit HslU -
  IRI77_RS23475 (IRI77_23475) - 5970689..5971684 (+) 996 WP_194447438.1 fibronectin type III domain-containing protein -
  IRI77_RS23480 (IRI77_23480) - 5971734..5972504 (+) 771 WP_228486281.1 fumarylacetoacetate hydrolase family protein -
  IRI77_RS23485 (IRI77_23485) fsa 5972535..5973197 (+) 663 WP_194447439.1 fructose-6-phosphate aldolase -
  IRI77_RS23490 (IRI77_23490) - 5973225..5973599 (+) 375 WP_194447440.1 hypothetical protein -
  IRI77_RS23495 (IRI77_23495) - 5973610..5974017 (+) 408 WP_194447441.1 Dabb family protein -
  IRI77_RS23500 (IRI77_23500) recA 5974151..5975236 (-) 1086 WP_194447442.1 recombinase RecA Machinery gene
  IRI77_RS23505 (IRI77_23505) - 5975438..5975782 (+) 345 WP_194447443.1 PadR family transcriptional regulator -
  IRI77_RS23510 (IRI77_23510) - 5975779..5978529 (+) 2751 WP_194447444.1 ABC transporter permease -
  IRI77_RS23515 (IRI77_23515) - 5978533..5978994 (-) 462 WP_194447445.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38714.39 Da        Isoelectric Point: 6.5154

>NTDB_id=497075 IRI77_RS23500 WP_194447442.1 5974151..5975236(-) (recA) [Paludibaculum fermentans strain P105]
MALEEKEKQRLLSVTLGNIEKQFGKGTIQRLGSHDAIVPVGVISSGSVSVDYALGVGGFPRGRIIEVYGPESSGKTTLAL
QAVAQAQKVGGMAAFVDVEHALDPIYARKLGVDVDNLLVSQPDYAEQALEITSALISSNAIDIIVVDSVAALVPKAELDG
EMGDSFMGVQARLMSQAMRKLTGNVSKSNTCLIFINQIREKIGVMFGNPETTTGGRALKFYSSVRIDIRRIAAIKDGENV
VGNRTKVKVVKNKLAPPFREAEFDIMYGEGISLMGDLVDIGVEHNIVEKSGSWYSFSGERIGQGRENAKQFLRDHPETLV
KLDQMVREVLGLAKLPDAVEPTVTPEPAAASGGKATRGSKS

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=497075 IRI77_RS23500 WP_194447442.1 5974151..5975236(-) (recA) [Paludibaculum fermentans strain P105]
ATGGCTCTCGAAGAGAAAGAAAAACAGCGGCTGCTGAGTGTCACGCTTGGCAATATTGAAAAGCAATTCGGCAAGGGCAC
CATCCAGCGGCTGGGCTCACACGATGCCATCGTTCCCGTCGGCGTCATCTCTTCCGGGTCGGTCTCCGTGGATTATGCGC
TGGGCGTGGGTGGATTCCCGCGCGGGCGCATCATCGAGGTGTACGGGCCGGAATCCTCTGGTAAGACCACGCTCGCGCTG
CAGGCGGTAGCCCAGGCGCAGAAGGTGGGCGGCATGGCGGCGTTCGTCGACGTGGAGCATGCGCTGGATCCTATCTATGC
GCGCAAGCTCGGCGTGGACGTGGACAACCTGCTGGTGTCGCAGCCGGATTATGCGGAACAGGCGCTGGAGATCACGTCGG
CGCTGATCAGCTCGAATGCGATCGACATCATCGTGGTGGACTCGGTGGCGGCGCTGGTGCCGAAGGCCGAACTCGACGGC
GAGATGGGCGACTCGTTCATGGGCGTGCAGGCGCGGCTGATGTCGCAGGCCATGCGCAAGCTGACTGGTAATGTCTCGAA
GTCGAACACCTGCCTGATCTTCATCAACCAGATCCGTGAAAAGATCGGCGTGATGTTCGGCAACCCGGAAACGACCACCG
GCGGCCGCGCGTTGAAGTTTTACTCCAGCGTACGTATCGACATCCGGCGCATTGCCGCGATCAAGGATGGCGAGAACGTG
GTGGGGAACCGGACCAAGGTGAAGGTGGTGAAGAACAAGCTGGCTCCGCCGTTCCGCGAAGCCGAGTTCGACATCATGTA
CGGTGAGGGCATCAGCCTGATGGGCGACCTGGTCGACATCGGCGTGGAGCACAACATCGTCGAGAAGAGCGGATCGTGGT
ACAGCTTCTCGGGCGAGCGCATCGGCCAGGGCCGCGAGAACGCCAAGCAGTTCCTGCGCGACCATCCCGAAACGCTGGTG
AAGCTGGATCAGATGGTGCGCGAGGTGCTGGGGCTGGCGAAGCTGCCGGATGCCGTTGAGCCGACGGTGACGCCGGAGCC
GGCGGCCGCGTCGGGCGGTAAGGCTACTCGGGGCTCCAAGAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7NLD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

64.11

90.305

0.579
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.11

90.305

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

63.804

90.305

0.576
  recA Ralstonia pseudosolanacearum GMI1000

64.984

87.812

0.571
  recA Acinetobacter baylyi ADP1

62.424

91.413

0.571
  recA Acinetobacter baumannii D1279779

59.195

96.399

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

59.593

95.291

0.568
  recA Helicobacter pylori strain NCTC11637

58.671

95.845

0.562
  recA Pseudomonas stutzeri DSM 10701

62.08

90.582

0.562
  recA Streptococcus mutans UA159

59.012

95.291

0.562
  recA Neisseria gonorrhoeae MS11

62.27

90.305

0.562
  recA Neisseria gonorrhoeae MS11

62.27

90.305

0.562
  recA Neisseria gonorrhoeae strain FA1090

62.27

90.305

0.562
  recA Streptococcus mitis SK321

60.059

93.629

0.562
  recA Helicobacter pylori 26695

58.382

95.845

0.56
  recA Streptococcus pneumoniae Rx1

61.212

91.413

0.56
  recA Streptococcus pneumoniae D39

61.212

91.413

0.56
  recA Streptococcus pneumoniae R6

61.212

91.413

0.56
  recA Streptococcus pneumoniae TIGR4

61.212

91.413

0.56
  recA Streptococcus mitis NCTC 12261

60.909

91.413

0.557
  recA Streptococcus pyogenes NZ131

60.486

91.136

0.551
  recA Glaesserella parasuis strain SC1401

59.05

93.352

0.551
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.697

91.413

0.546
  recA Lactococcus lactis subsp. cremoris KW2

58.485

91.413

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

91.136

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

90.305

0.521