Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ICN83_RS09110 Genome accession   NZ_CP063839
Coordinates   1940969..1942048 (+) Length   359 a.a.
NCBI ID   WP_067110620.1    Uniprot ID   -
Organism   Sphingopyxis granuli strain RW412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935969..1947048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN83_RS09100 (ICN83_09105) - 1938077..1940509 (+) 2433 WP_212599011.1 response regulator -
  ICN83_RS09105 (ICN83_09110) - 1940499..1940852 (+) 354 WP_067110669.1 response regulator -
  ICN83_RS09110 (ICN83_09115) recA 1940969..1942048 (+) 1080 WP_067110620.1 recombinase RecA Machinery gene
  ICN83_RS09115 (ICN83_09120) - 1942286..1942978 (-) 693 WP_212598836.1 TetR/AcrR family transcriptional regulator -
  ICN83_RS09120 (ICN83_09125) - 1943149..1944339 (-) 1191 WP_212598837.1 PhoPQ-activated protein PqaA family protein -
  ICN83_RS09125 (ICN83_09130) - 1944396..1945139 (-) 744 WP_276516474.1 Asp/Glu racemase -
  ICN83_RS09130 (ICN83_09135) - 1945186..1946337 (-) 1152 WP_212598838.1 thiolase family protein -
  ICN83_RS09135 (ICN83_09140) - 1946337..1946714 (-) 378 WP_212598839.1 Zn-ribbon domain-containing OB-fold protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38462.93 Da        Isoelectric Point: 4.9551

>NTDB_id=497031 ICN83_RS09110 WP_067110620.1 1940969..1942048(+) (recA) [Sphingopyxis granuli strain RW412]
MAGQLSLVESGKSVNGPDRQKALDAALAQIDRAFGKGSVMKLGSKEAMQVEAISTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHCIAEAQKVGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKDRDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKN
FLSENPELMQRLESAIRGRTDAVAEEMMTGPDDGDDDDL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=497031 ICN83_RS09110 WP_067110620.1 1940969..1942048(+) (recA) [Sphingopyxis granuli strain RW412]
ATGGCCGGACAATTGTCACTCGTCGAATCGGGGAAATCAGTGAACGGACCAGACAGGCAGAAGGCGCTCGACGCCGCATT
GGCGCAGATCGACCGCGCCTTCGGCAAGGGCTCGGTGATGAAGCTCGGCTCGAAGGAGGCGATGCAGGTCGAGGCGATCT
CCACCGGTTCGCTCGGGCTCGACATTGCGCTTGGGGTCGGTGGCTTGCCGCGCGGACGCGTGATCGAAATCTATGGCCCC
GAAAGTTCGGGCAAGACTACGCTCGCGCTGCATTGTATCGCTGAGGCGCAGAAGGTGGGCGGCACCGCGGCCTTCGTCGA
CGCCGAACATGCGCTCGATCCCGTCTATGCGAAGAAGCTTGGCGTCGACATCGACGAACTAATCGTGTCGCAGCCCGACA
CCGGCGAGCAGGCACTGGAGATCGTCGACACGCTGGTACGTTCGAACGCGATCGACGTGCTTGTCGTCGATTCGGTCGCG
GCGCTCGTTCCGCGCGCGGAGATCGAGGGCGAGATGGGCGACAGTCATGTCGGCCTGCAGGCACGGCTGATGTCGCAGAG
CCTGCGCAAGCTCACCGGGTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGGAATCCCGAGACGACAACCGGCGGCAACGCGCTCAAATTCTATGCCTCGGTCCGCCTCGACATTCGCCGC
ACCGGGCAGATCAAGGACCGCGACGAGATCGTCGGCAACACGACGCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAGTTCGACATCATGTACGGCCAGGGTATTTCGAAGATCGGCGAAATCCTCGACCTCGGTGTCAAGG
CCGGGCTGGTCGAGAAATCGGGCGCCTGGTTCAGCTATGATTCGATCCGAATCGGGCAGGGCCGAGAGAATGCGAAGAAC
TTCCTGAGCGAGAATCCCGAGCTGATGCAGCGGCTCGAAAGCGCGATCCGCGGCCGCACCGATGCGGTGGCGGAAGAGAT
GATGACCGGCCCCGACGACGGGGACGACGACGATCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

68.155

93.593

0.638
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.155

93.593

0.638
  recA Glaesserella parasuis strain SC1401

65.143

97.493

0.635
  recA Pseudomonas stutzeri DSM 10701

70.497

89.694

0.632
  recA Neisseria gonorrhoeae MS11

69.159

89.415

0.618
  recA Neisseria gonorrhoeae MS11

69.159

89.415

0.618
  recA Neisseria gonorrhoeae strain FA1090

69.159

89.415

0.618
  recA Acinetobacter baylyi ADP1

64.412

94.708

0.61
  recA Acinetobacter baumannii D1279779

68.125

89.136

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.861

92.201

0.607
  recA Ralstonia pseudosolanacearum GMI1000

70.779

85.794

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

67.188

89.136

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.798

93.872

0.599
  recA Helicobacter pylori strain NCTC11637

62.908

93.872

0.591
  recA Helicobacter pylori 26695

62.611

93.872

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

61.947

94.429

0.585
  recA Streptococcus pyogenes NZ131

59.824

94.986

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.059

94.15

0.565
  recA Streptococcus pneumoniae R6

61.585

91.365

0.563
  recA Streptococcus pneumoniae TIGR4

61.585

91.365

0.563
  recA Streptococcus pneumoniae Rx1

61.585

91.365

0.563
  recA Streptococcus pneumoniae D39

61.585

91.365

0.563
  recA Streptococcus mitis NCTC 12261

61.656

90.808

0.56
  recA Streptococcus mitis SK321

61.656

90.808

0.56
  recA Streptococcus mutans UA159

58.651

94.986

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.202

90.808

0.538