Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IM776_RS07015 Genome accession   NZ_CP063815
Coordinates   1451701..1452756 (+) Length   351 a.a.
NCBI ID   WP_194422268.1    Uniprot ID   -
Organism   Microbacterium abyssi strain A18JL241     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1446701..1457756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM776_RS06990 - 1446978..1449698 (+) 2721 WP_194422263.1 DNA translocase FtsK -
  IM776_RS06995 pgsA 1449698..1450273 (+) 576 WP_194422264.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IM776_RS07000 - 1450270..1450755 (+) 486 WP_228479960.1 CinA family protein -
  IM776_RS07005 - 1450900..1451208 (+) 309 WP_194422266.1 helix-turn-helix transcriptional regulator -
  IM776_RS07010 - 1451233..1451457 (+) 225 WP_194422267.1 DUF3046 domain-containing protein -
  IM776_RS07015 recA 1451701..1452756 (+) 1056 WP_194422268.1 recombinase RecA Machinery gene
  IM776_RS07020 - 1452924..1453478 (+) 555 WP_228479961.1 regulatory protein RecX -
  IM776_RS07025 miaB 1453511..1455061 (+) 1551 WP_194422270.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IM776_RS07030 miaA 1455054..1455995 (+) 942 WP_228479962.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  IM776_RS07035 - 1455992..1456516 (+) 525 WP_194422271.1 dihydrofolate reductase family protein -
  IM776_RS07040 dapF 1456552..1457424 (+) 873 WP_194422272.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37354.72 Da        Isoelectric Point: 5.8084

>NTDB_id=496843 IM776_RS07015 WP_194422268.1 1451701..1452756(+) (recA) [Microbacterium abyssi strain A18JL241]
MPTPADREKSLESALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGSWYTYDGDQLGQGKENARNFLIANPDIALTI
ETQIKQKLGIGGAAAPEAVPAADELAQRRPA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=496843 IM776_RS07015 WP_194422268.1 1451701..1452756(+) (recA) [Microbacterium abyssi strain A18JL241]
ATGCCAACACCCGCAGACCGCGAGAAGTCTCTGGAATCAGCTCTCGCCCAGATCGATCGCCAGTTCGGGAAGGGCTCGGT
CATGCGACTGGGCAGCGACGAGCGTGCGCCTGTCGCAGTCATCCCGACCGGTTCCATCGCCCTTGACGTCGCCCTCGGCG
TCGGCGGCCTTCCGCGTGGCCGCATCGTGGAGATCTACGGTCCGGAGTCGTCGGGTAAGACGACGCTGACCCTGCACGCG
ATCGCCAACGCCCAGCGCGCCGGCGGCATCGCCGCGTTCATCGATGCGGAGCACGCGCTCGACCCCGAGTACGCGAAGAA
GCTCGGCGTCGACATCGACGCGCTTCTGGTCTCGCAGCCCGACACCGGTGAGCAGGCACTCGAGATCGCCGACATGCTCG
TCCGCTCCGGCGCGATCGACCTCATCGTCATCGACTCCGTGGCGGCGCTCGTGCCGCGTGCGGAGATCGAGGGCGAGATG
GGCGACTCACACGTCGGTCTGCAGGCCCGCCTCATGTCGCAGGCGCTGCGCAAGCTCACCGGTGGGCTCAACCAGACCAA
CACCACCATGATCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTGTTCTTCGGCTCGCCCGAGACCACCGCCGGTGGAA
AGGCGCTGAAATTCTACGCGTCCGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGCACGGACGCAGTCGGA
AACCGCACTCGCGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGT
GGGAATCTCCCGTGAGGGAAGCCTGATCGACTTCGGCGTCGAGCACGCCATCGTCAAGAAGTCGGGCTCGTGGTACACCT
ACGACGGTGACCAGCTCGGGCAGGGCAAGGAGAACGCCCGCAACTTCCTGATCGCCAACCCCGACATCGCGCTGACGATC
GAGACGCAGATCAAGCAGAAGCTCGGCATCGGCGGTGCCGCGGCTCCCGAGGCCGTGCCGGCTGCGGACGAGCTCGCGCA
GCGCCGCCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.689

97.151

0.638
  recA Acinetobacter baumannii D1279779

65.373

95.442

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

92.877

0.615
  recA Acinetobacter baylyi ADP1

66.873

92.023

0.615
  recA Vibrio cholerae strain A1552

66.873

92.023

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

92.023

0.615
  recA Ralstonia pseudosolanacearum GMI1000

68.69

89.174

0.613
  recA Neisseria gonorrhoeae MS11

65.644

92.877

0.61
  recA Neisseria gonorrhoeae MS11

65.644

92.877

0.61
  recA Neisseria gonorrhoeae strain FA1090

65.644

92.877

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.72

93.447

0.595
  recA Streptococcus mitis SK321

60.057

99.145

0.595
  recA Glaesserella parasuis strain SC1401

61.357

96.581

0.593
  recA Helicobacter pylori 26695

60

98.291

0.59
  recA Helicobacter pylori strain NCTC11637

60

98.291

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

63.385

92.593

0.587
  recA Streptococcus mitis NCTC 12261

61.212

94.017

0.575
  recA Streptococcus pneumoniae R6

60.909

94.017

0.573
  recA Streptococcus pneumoniae Rx1

60.909

94.017

0.573
  recA Streptococcus pneumoniae D39

60.909

94.017

0.573
  recA Streptococcus pneumoniae TIGR4

60.909

94.017

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.909

94.017

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

93.732

0.57
  recA Streptococcus mutans UA159

60.182

93.732

0.564
  recA Streptococcus pyogenes NZ131

59.756

93.447

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

92.593

0.55