Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IR212_RS05675 Genome accession   NZ_CP063813
Coordinates   1282895..1283950 (+) Length   351 a.a.
NCBI ID   WP_194397985.1    Uniprot ID   -
Organism   Microbacterium atlanticum strain WY121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1277895..1288950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR212_RS05650 - 1278050..1280776 (+) 2727 WP_194397982.1 DNA translocase FtsK -
  IR212_RS05655 pgsA 1280827..1281399 (+) 573 WP_194397983.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IR212_RS05660 - 1281396..1281899 (+) 504 WP_194398758.1 CinA family protein -
  IR212_RS05665 - 1282051..1282359 (+) 309 WP_109211855.1 helix-turn-helix domain-containing protein -
  IR212_RS05670 - 1282396..1282620 (+) 225 WP_194397984.1 DUF3046 domain-containing protein -
  IR212_RS05675 recA 1282895..1283950 (+) 1056 WP_194397985.1 recombinase RecA Machinery gene
  IR212_RS05680 - 1284061..1284702 (+) 642 WP_228479501.1 regulatory protein RecX -
  IR212_RS05685 miaB 1284768..1286321 (+) 1554 WP_194397987.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IR212_RS05690 miaA 1286398..1287351 (+) 954 WP_194397988.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  IR212_RS05695 - 1287348..1287770 (+) 423 WP_194397989.1 GNAT family acetyltransferase -
  IR212_RS05700 dapF 1287805..1288692 (+) 888 WP_194397990.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37413.76 Da        Isoelectric Point: 5.5332

>NTDB_id=496831 IR212_RS05675 WP_194397985.1 1282895..1283950(+) (recA) [Microbacterium atlanticum strain WY121]
MPSPLDREKALESALAQIDRQFGKGSVMRLGSDERAPVEVVPTGSIALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQRAGGIAAFVDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAIDLVVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGAWYTYDGEQLGQGKENARNFLIKNEDVAAEI
ESKIKTKLGIGVPKGAVDGAAGDELAARRPA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=496831 IR212_RS05675 WP_194397985.1 1282895..1283950(+) (recA) [Microbacterium atlanticum strain WY121]
ATGCCATCACCCCTTGACCGCGAGAAGGCCCTGGAGTCGGCCCTCGCACAGATCGACCGGCAGTTCGGCAAGGGCTCGGT
GATGCGCCTCGGCAGCGACGAGCGCGCGCCCGTCGAGGTCGTGCCGACCGGCTCCATCGCCCTCGACGTCGCCCTCGGCA
TCGGCGGCCTTCCGCGCGGCCGCATCATCGAGATCTATGGGCCGGAGTCATCGGGCAAGACGACGCTGACCCTTCACGCC
ATCGCCAACGTGCAGCGCGCCGGCGGCATCGCCGCGTTCGTCGACGCGGAGCACGCGCTCGACCCCGACTACGCACAGAA
GCTGGGCGTCGACATCGACCAGCTGCTCGTGTCGCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGG
TGCGCTCGGGCGCCATCGACCTCGTCGTCATCGACTCCGTCGCAGCCCTCGTGCCCAAGGCCGAGATCGAGGGTGAGATG
GGAGACTCGCACGTCGGTCTTCAGGCGCGGCTCATGTCGCAGGCTCTCCGCAAGCTGACCGGTGGGCTCAACCAGACCAA
CACCACGATGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGTTCTTCGGCTCGCCCGAAACCACCGCCGGCGGCA
AGGCTCTGAAGTTCTACGCGTCCGTGCGGCTCGACATCCGACGCATCGAGACACTCAAGGACGGCACAGAGGCGGTCGGC
AACCGCACGCGGGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCGT
CGGCATCTCGCGTGAAGGCAGCCTCATCGACTTCGGCGTGGAGCACGGCATCGTCAAGAAGTCGGGCGCGTGGTACACCT
ACGACGGCGAACAGCTGGGGCAGGGCAAGGAGAACGCGCGCAACTTCCTCATCAAGAACGAGGATGTCGCCGCTGAGATC
GAGTCGAAGATCAAGACGAAGCTCGGCATCGGTGTGCCCAAGGGCGCGGTTGACGGCGCGGCCGGAGACGAGCTGGCGGC
GCGCCGCCCTGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.372

96.581

0.641
  recA Acinetobacter baumannii D1279779

67.771

94.587

0.641
  recA Ralstonia pseudosolanacearum GMI1000

69.688

91.168

0.635
  recA Neisseria gonorrhoeae MS11

64.451

98.575

0.635
  recA Neisseria gonorrhoeae strain FA1090

64.451

98.575

0.635
  recA Neisseria gonorrhoeae MS11

64.451

98.575

0.635
  recA Pseudomonas stutzeri DSM 10701

68.421

92.023

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

67.692

92.593

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

92.023

0.607
  recA Vibrio cholerae strain A1552

65.944

92.023

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

96.866

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

63.939

94.017

0.601
  recA Glaesserella parasuis strain SC1401

61.765

96.866

0.598
  recA Lactococcus lactis subsp. cremoris KW2

63.222

93.732

0.593
  recA Helicobacter pylori 26695

63.692

92.593

0.59
  recA Helicobacter pylori strain NCTC11637

63.692

92.593

0.59
  recA Streptococcus mitis SK321

61.818

94.017

0.581
  recA Streptococcus mitis NCTC 12261

61.212

94.017

0.575
  recA Streptococcus pneumoniae R6

61.398

93.732

0.575
  recA Streptococcus pneumoniae Rx1

61.398

93.732

0.575
  recA Streptococcus pneumoniae D39

61.398

93.732

0.575
  recA Streptococcus pneumoniae TIGR4

61.398

93.732

0.575
  recA Streptococcus pyogenes NZ131

61.094

93.732

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

93.732

0.57
  recA Streptococcus mutans UA159

60.486

93.732

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.062

91.168

0.538