Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HGR01_RS01595 Genome accession   NZ_CP063785
Coordinates   445163..446239 (+) Length   358 a.a.
NCBI ID   WP_045869991.1    Uniprot ID   A0A0D6KU79
Organism   Tolypothrix sp. PCC 7712     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 440163..451239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGR01_RS01580 (HGR01_01550) - 441853..442188 (-) 336 WP_228045425.1 TRADD-N-associated membrane domain-containing protein -
  HGR01_RS01585 (HGR01_01555) - 442946..443644 (-) 699 WP_052335163.1 hypothetical protein -
  HGR01_RS01590 (HGR01_01560) - 444371..444796 (+) 426 WP_045869990.1 hypothetical protein -
  HGR01_RS01595 (HGR01_01565) recA 445163..446239 (+) 1077 WP_045869991.1 recombinase RecA Machinery gene
  HGR01_RS01600 (HGR01_01570) - 446609..447427 (-) 819 WP_045869992.1 FHA domain-containing protein -
  HGR01_RS01605 (HGR01_01575) - 448574..450190 (-) 1617 WP_045869993.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38384.70 Da        Isoelectric Point: 4.8950

>NTDB_id=496790 HGR01_RS01595 WP_045869991.1 445163..446239(+) (recA) [Tolypothrix sp. PCC 7712]
MAINTDTSGKQKALNIVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HAIAEVQREGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGEAALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGVSTIGCLVDLAEETGILLRKGAWYSYNGENISQGRDNAIKYLEEKPEFAA
QIKQLVREKLDKGAVVSANSVTKVSDDEEEEEVDSDEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=496790 HGR01_RS01595 WP_045869991.1 445163..446239(+) (recA) [Tolypothrix sp. PCC 7712]
ATGGCTATCAATACCGATACTTCTGGCAAGCAAAAAGCGCTGAATATTGTACTCAACCAGATTGAGCGCAGCTTTGGTAA
GGGAGCAATCATGCGCCTCGGGGATGCTACTCGGATGCGAGTAGAGACCATTTCCACTGGTGCACTCACCTTAGATCTCG
CATTGGGTGGTGGTTTACCCAAGGGACGGGTGATTGAGATTTACGGGCCGGAAAGTTCCGGTAAAACAACAGTAGCGCTA
CATGCGATCGCTGAAGTGCAACGAGAAGGTGGTATTGCTGCCTTTGTGGATGCTGAACACGCCCTCGATCCTACCTATGC
TGCGGCTTTAGGCGTAGATATTGAAAATCTTCTGGTTTCCCAACCCGACACTGGTGAAGCCGCATTAGAAATTGTCGATC
AGCTTGTGCGCTCTGCTGCTGTTGACATTGTAGTCATTGACTCTGTAGCCGCATTAGTTCCTCGGGCAGAAATAGAAGGC
GATATGGGTGATGCTCACGTTGGTCTTCAAGCTCGACTCATGAGCCAAGCTTTACGTAAAATTACTGGAAATATTGGTAA
ATCTGGTTGCACAGTAATTTTTATTAACCAACTACGGCAAAAAATCGGTGTTACCTACGGTAGCCCAGAAACTACCACTG
GTGGTAATGCCTTAAAATTCTATGCTTCTGTACGCTTAGATATTCGCCGAATTCAAACCTTGAAAAAAGGTACAGATGAA
TTTGGTAACCGCGTTAAAGTGAAGGTAGCAAAAAATAAAGTAGCACCACCCTTTAGAATTGCAGAATTTGACATTATTTT
TGGTAAGGGAGTTTCTACTATAGGTTGTCTTGTTGACCTTGCGGAAGAAACAGGCATCTTGCTCCGCAAAGGAGCTTGGT
ATAGCTACAATGGCGAAAATATTTCCCAAGGTAGAGACAACGCCATCAAATACTTAGAAGAAAAACCAGAATTTGCTGCA
CAAATTAAGCAGTTGGTACGTGAAAAGCTAGACAAAGGAGCTGTTGTTTCTGCTAACTCTGTAACCAAAGTCAGCGACGA
CGAGGAAGAGGAAGAAGTCGATTCAGACGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6KU79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.103

98.045

0.628
  recA Pseudomonas stutzeri DSM 10701

64.412

94.972

0.612
  recA Acinetobacter baumannii D1279779

63.636

95.251

0.606
  recA Ralstonia pseudosolanacearum GMI1000

64.048

92.458

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.737

0.584
  recA Helicobacter pylori 26695

61.747

92.737

0.573
  recA Helicobacter pylori strain NCTC11637

61.747

92.737

0.573
  recA Neisseria gonorrhoeae MS11

64.062

89.385

0.573
  recA Neisseria gonorrhoeae MS11

64.062

89.385

0.573
  recA Neisseria gonorrhoeae strain FA1090

64.062

89.385

0.573
  recA Streptococcus pneumoniae Rx1

57.746

99.162

0.573
  recA Streptococcus pneumoniae R6

57.746

99.162

0.573
  recA Streptococcus pneumoniae D39

57.746

99.162

0.573
  recA Streptococcus pneumoniae TIGR4

57.746

99.162

0.573
  recA Glaesserella parasuis strain SC1401

58.453

97.486

0.57
  recA Streptococcus mutans UA159

57.627

98.883

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

89.944

0.564
  recA Vibrio cholerae strain A1552

62.733

89.944

0.564
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.721

96.089

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

91.62

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

61.442

89.106

0.547
  recA Streptococcus mitis SK321

60.681

90.223

0.547
  recA Streptococcus mitis NCTC 12261

60.372

90.223

0.545
  recA Streptococcus pyogenes NZ131

59.816

91.061

0.545
  recA Lactococcus lactis subsp. cremoris KW2

59.133

90.223

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.458

0.531