Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INQ40_RS08545 Genome accession   NZ_CP063772
Coordinates   1883988..1885085 (-) Length   365 a.a.
NCBI ID   WP_228481968.1    Uniprot ID   -
Organism   Lysobacter sp. H21R4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1878988..1890085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ40_RS08515 (INQ40_08515) - 1879121..1879975 (+) 855 WP_194340101.1 TIGR04325 family methyltransferase -
  INQ40_RS08530 (INQ40_08530) csrA 1880304..1880516 (-) 213 WP_193983781.1 carbon storage regulator CsrA -
  INQ40_RS08535 (INQ40_08535) alaS 1880671..1883331 (-) 2661 WP_194340102.1 alanine--tRNA ligase -
  INQ40_RS08540 (INQ40_08540) recX 1883411..1883956 (-) 546 WP_194340103.1 recombination regulator RecX -
  INQ40_RS08545 (INQ40_08545) recA 1883988..1885085 (-) 1098 WP_228481968.1 recombinase RecA Machinery gene
  INQ40_RS08550 (INQ40_08550) lexA 1885277..1885963 (-) 687 WP_194340104.1 transcriptional repressor LexA -
  INQ40_RS08555 (INQ40_08555) - 1886021..1886521 (-) 501 WP_193983789.1 CinA family protein -
  INQ40_RS08560 (INQ40_08560) - 1886603..1888030 (+) 1428 WP_228481969.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39229.24 Da        Isoelectric Point: 5.4190

>NTDB_id=496695 INQ40_RS08545 WP_228481968.1 1883988..1885085(-) (recA) [Lysobacter sp. H21R4]
MDENKKRALSAALGQIEKQFGKGSVMRMGDRVVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPTYAAKLGVNVEDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSGTLVVFINQLRHKIGQMMPGQSPEVTTGGNALKFYASVRLDIRRIGAVKKGDEIIG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGELIEMGLEAKLVERAGAWYSMGEERIGQGKENARQYLKDNVELAERL
EAEIRKRLVPIEIVKAEAAAAGTEDEEDARDAKVGKPAKGAKAEV

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=496695 INQ40_RS08545 WP_228481968.1 1883988..1885085(-) (recA) [Lysobacter sp. H21R4]
ATGGACGAGAACAAAAAGCGCGCTCTTTCCGCGGCCTTGGGCCAGATCGAGAAGCAGTTTGGCAAGGGTTCGGTCATGCG
CATGGGCGACCGTGTCGTCGAAGCCGCCGAGGTCATCGGCACCGGTTCGCTGATGCTGGACATCGCGCTCGGCATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATCTACGGTCCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGCGATTGCC
GAGTGCCAGAAGATGGGCGGCACCGCTGCGTTCATCGACGCCGAGCACGCCCTCGATCCGACCTACGCCGCCAAGCTGGG
CGTGAATGTCGAAGACCTGCTGCTCTCGCAGCCCGACACCGGTGAGCAGGCACTGGAAATCGCCGACATGCTGGTGCGCT
CCGCCGCGGTGGACATCGTGGTGATCGACTCGGTCGCTGCGCTCACCCCACGGGCCGAGATCGAGGGCGAGATGGGCGAC
CAGTTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGTTCCGGCACCCT
GGTGGTCTTCATCAACCAGCTGCGCCACAAGATCGGCCAGATGATGCCGGGCCAGAGCCCGGAGGTGACCACCGGCGGCA
ACGCGTTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGGATCGGTGCGGTCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTCTACGGTGA
GGGCATCTCCCGCGAGGGCGAGCTGATCGAGATGGGTTTGGAGGCCAAGCTGGTCGAGCGCGCAGGCGCCTGGTACAGCA
TGGGCGAGGAGCGCATCGGCCAGGGCAAGGAGAACGCCCGCCAGTACCTCAAGGACAACGTCGAACTCGCCGAGCGCCTG
GAGGCCGAGATCCGCAAGCGTCTGGTGCCCATCGAGATCGTCAAGGCGGAAGCCGCGGCGGCGGGTACGGAAGACGAAGA
GGATGCCAGGGACGCCAAGGTCGGCAAGCCGGCGAAGGGCGCCAAGGCCGAGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.797

96.986

0.658
  recA Acinetobacter baylyi ADP1

66.382

96.164

0.638
  recA Acinetobacter baumannii D1279779

66.954

95.342

0.638
  recA Ralstonia pseudosolanacearum GMI1000

72.843

85.753

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.029

94.795

0.616
  recA Vibrio cholerae strain A1552

65.029

94.795

0.616
  recA Neisseria gonorrhoeae MS11

64.183

95.616

0.614
  recA Neisseria gonorrhoeae MS11

64.183

95.616

0.614
  recA Neisseria gonorrhoeae strain FA1090

64.183

95.616

0.614
  recA Glaesserella parasuis strain SC1401

63.533

96.164

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.078

95.068

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.261

91.233

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

62.037

88.767

0.551
  recA Streptococcus mutans UA159

56.818

96.438

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

61.61

88.493

0.545
  recA Streptococcus mitis SK321

57.225

94.795

0.542
  recA Helicobacter pylori strain NCTC11637

60.061

89.863

0.54
  recA Streptococcus mitis NCTC 12261

56.936

94.795

0.54
  recA Helicobacter pylori 26695

59.756

89.863

0.537
  recA Streptococcus pneumoniae D39

58.232

89.863

0.523
  recA Streptococcus pneumoniae Rx1

58.232

89.863

0.523
  recA Streptococcus pneumoniae R6

58.232

89.863

0.523
  recA Streptococcus pneumoniae TIGR4

58.232

89.863

0.523
  recA Streptococcus pyogenes NZ131

57.879

90.411

0.523
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

89.315

0.515
  recA Lactococcus lactis subsp. cremoris KW2

56.923

89.041

0.507