Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INQ43_RS08505 Genome accession   NZ_CP063658
Coordinates   1890225..1891322 (-) Length   365 a.a.
NCBI ID   WP_228062459.1    Uniprot ID   -
Organism   Lysobacter sp. H23M47     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1885225..1896322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ43_RS08490 (INQ43_08490) csrA 1886524..1886736 (-) 213 WP_194033884.1 carbon storage regulator CsrA -
  INQ43_RS08495 (INQ43_08495) alaS 1886892..1889567 (-) 2676 WP_194036162.1 alanine--tRNA ligase -
  INQ43_RS08500 (INQ43_08500) recX 1889648..1890193 (-) 546 WP_194033886.1 recombination regulator RecX -
  INQ43_RS08505 (INQ43_08505) recA 1890225..1891322 (-) 1098 WP_228062459.1 recombinase RecA Machinery gene
  INQ43_RS08510 (INQ43_08510) lexA 1891513..1892199 (-) 687 WP_194033887.1 transcriptional repressor LexA -
  INQ43_RS08515 (INQ43_08515) - 1892256..1892756 (-) 501 WP_194036163.1 CinA family protein -
  INQ43_RS08520 (INQ43_08520) - 1892862..1895456 (-) 2595 WP_194036164.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39201.22 Da        Isoelectric Point: 5.4190

>NTDB_id=496164 INQ43_RS08505 WP_228062459.1 1890225..1891322(-) (recA) [Lysobacter sp. H23M47]
MDENKKRALSAALGQIEKQFGKGSVMRMGDRVVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPTYAAKLGVNVEDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSGTLVVFINQLRHKIGQMMPGQSPEVTTGGNALKFYASVRLDIRRIGAVKKGDEIIG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGELIEMGLEAKLVERAGAWYSMGEERIGQGKENARQYLKDNVELAERL
EAEIRKRLVPIEIVKAEAAAAGTEDEEDAKDAKVGKPAKGAKAEV

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=496164 INQ43_RS08505 WP_228062459.1 1890225..1891322(-) (recA) [Lysobacter sp. H23M47]
ATGGACGAGAACAAAAAGCGCGCTCTTTCCGCGGCCTTGGGCCAGATCGAGAAGCAGTTTGGCAAGGGTTCGGTCATGCG
CATGGGCGACCGTGTCGTTGAGGCCGCCGAGGTCATCGGCACCGGTTCGCTGATGCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATCTACGGTCCGGAGTCCTCCGGCAAGACCACCCTGACGCTGCAGGCGATTGCC
GAGTGCCAGAAGATGGGCGGCACCGCCGCCTTCATCGATGCCGAGCACGCCCTCGATCCGACCTACGCCGCCAAGCTGGG
CGTGAATGTTGAAGACCTGCTGCTCTCGCAGCCCGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CCGCCGCGGTGGACATCGTGGTGATCGACTCGGTCGCCGCGCTCACCCCACGGGCCGAGATCGAGGGCGAGATGGGCGAC
CAGTTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCGGCACCCT
GGTGGTCTTCATCAACCAGCTGCGCCACAAGATCGGCCAGATGATGCCGGGCCAGAGCCCGGAGGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGTATCGGCGCGGTCAAGAAGGGCGATGAGATCATCGGC
AACCAGACCCGCATCAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTCTACGGCGA
GGGCATCTCGCGCGAGGGCGAGCTGATCGAGATGGGCCTGGAGGCCAAGCTGGTCGAGCGCGCAGGCGCCTGGTACAGCA
TGGGCGAGGAGCGCATCGGCCAGGGCAAGGAGAACGCCCGCCAGTACCTCAAGGACAACGTGGAACTGGCCGAGCGCCTG
GAGGCCGAGATCCGCAAGCGTCTGGTGCCCATCGAGATCGTCAAGGCGGAAGCCGCGGCGGCGGGTACGGAAGACGAAGA
GGATGCCAAGGACGCCAAGGTCGGCAAGCCGGCTAAGGGCGCCAAGGCCGAGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.797

96.986

0.658
  recA Acinetobacter baylyi ADP1

66.382

96.164

0.638
  recA Acinetobacter baumannii D1279779

66.954

95.342

0.638
  recA Ralstonia pseudosolanacearum GMI1000

72.843

85.753

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.029

94.795

0.616
  recA Vibrio cholerae strain A1552

65.029

94.795

0.616
  recA Neisseria gonorrhoeae MS11

63.818

96.164

0.614
  recA Neisseria gonorrhoeae MS11

63.818

96.164

0.614
  recA Neisseria gonorrhoeae strain FA1090

63.818

96.164

0.614
  recA Glaesserella parasuis strain SC1401

63.533

96.164

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.078

95.068

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.261

91.233

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

62.037

88.767

0.551
  recA Streptococcus mutans UA159

57.102

96.438

0.551
  recA Latilactobacillus sakei subsp. sakei 23K

61.61

88.493

0.545
  recA Streptococcus mitis SK321

57.225

94.795

0.542
  recA Helicobacter pylori strain NCTC11637

60.061

89.863

0.54
  recA Streptococcus mitis NCTC 12261

56.936

94.795

0.54
  recA Helicobacter pylori 26695

59.756

89.863

0.537
  recA Streptococcus pneumoniae D39

58.232

89.863

0.523
  recA Streptococcus pneumoniae Rx1

58.232

89.863

0.523
  recA Streptococcus pneumoniae R6

58.232

89.863

0.523
  recA Streptococcus pneumoniae TIGR4

58.232

89.863

0.523
  recA Streptococcus pyogenes NZ131

57.879

90.411

0.523
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

89.315

0.515
  recA Lactococcus lactis subsp. cremoris KW2

56.923

89.041

0.507